SCOP 1.75: Domain d2oyqb2: 2oyq B:376-899

Lineage for d2oyqb2 (2oyq B:376-899)

1. Root: SCOP 1.75

2. Class e: Multi-domain proteins (alpha and beta) [56572] (66 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (6 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.1: DNA polymerase I [56673] (4 proteins)

6. Protein Family B DNA polymerase [56680] (7 species)

7. Species Bacteriophage RB69 [TaxId:12353] [56681] (15 PDB entries)

8. Domain d2oyqb2: 2oyq B:376-899 [149073]
   Other proteins in same PDB: d2oyqa1, d2oyqb1, d2oyqc1, d2oyqd1
   automatically matched to d1clqa2
   complexed with 3dr, mg, n5i, n5p; mutant

Details for d2oyqb2

PDB Entry: 2oyq, 2.86 Å

PDB Description: crystal structure of rb69 gp43 in complex with dna with 5-nimp opposite an abasic site analog

PDB Compounds: (B:) DNA polymerase

SCOP Domain Sequences for d2oyqb2:

Sequence, based on SEQRES records:

>d2oyqb2 e.8.1.1 (B:376-899) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]}
qnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfk
vaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaaqrn
geiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslnemlfraqrtevagmta
qinrkllinslygalgnvwfryydlrnataittfgqmalqwierkvneylnevcgtegea
fvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfremceymn
nkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmegtryaepklkimgletqks
stpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisiasvssanniakydvgg
fpgpkcpfhirgiltynraikgnidapqvvegekvyvlplregnpfgdkciawpsgteit
dlikddvlhwmdytvllektfikplegftsaakldyekkaslfd

Sequence, based on observed residues (ATOM records):

>d2oyqb2 e.8.1.1 (B:376-899) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]}
qnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfk
vaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlrteva
gmtaqinrkllinslygalgnvwfryydlrnataittfgqmalqwierkvneylnevcgt
egeafvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfremc
eymnnkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmegtryaepklkimgle
tqksstpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisidytvllektfik
plegftsaakldyekkaslfd

Timeline for d2oyqb2:

• d2oyqb2 is new in SCOP 1.75
  
• d2oyqb2 appears in SCOPe 2.01
  
• d2oyqb2 appears in the current release, SCOPe 2.08