SCOP 1.75: Domain d2oyqb1: 2oyq B:1-375

Lineage for d2oyqb1 (2oyq B:1-375)

1. Root: SCOP 1.75

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (14 families)
   consists of one domain of this fold

5. Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (15 proteins)
   contains Pfam PF00929

6. Protein Exonuclease domain of family B DNA polymerases [53125] (8 species)
   elaborated with additional structures and the N-terminal subdomain

7. Species Bacteriophage RB69 [TaxId:12353] [53127] (15 PDB entries)
   additional N-terminal subdomain contains rudimental OB-fold and rudimental ferredoxin-like fold

8. Domain d2oyqb1: 2oyq B:1-375 [149072]
   Other proteins in same PDB: d2oyqa2, d2oyqb2, d2oyqc2, d2oyqd2
   automatically matched to d1clqa1
   complexed with 3dr, mg, n5i, n5p; mutant

Details for d2oyqb1

PDB Entry: 2oyq, 2.86 Å

PDB Description: crystal structure of rb69 gp43 in complex with dna with 5-nimp opposite an abasic site analog

PDB Compounds: (B:) DNA polymerase

SCOP Domain Sequences for d2oyqb1:

Sequence; same for both SEQRES and ATOM records:

>d2oyqb1 c.55.3.5 (B:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]}
mkefyltveqigdsiferyidsngrertreveykpslfahcpesqatkyfdiygkpctrk
lfanmrdasqwikrmediglealgmddfklaylsdtynyeikydhtkirvanfdievtsp
dgfpepsqakhpidaithydsiddrfyvfdllnspygnveewsieiaaklqeqggdevps
eiidkiiympfdnekellmeylnfwqqktpviltgwnvesfaipyvynriknifgestak
rlsphrktrvkvienmygsreiitlfgisvldyidlykkfsftnqpsysldyisefelnv
gklkydgpisklresnhqryisyniiavyrvlqidakrqfinlsldmgyyakiqiqsvfs
piktwdaiifnslke

Timeline for d2oyqb1:

• d2oyqb1 is new in SCOP 1.75
  
• d2oyqb1 appears in SCOPe 2.01
  
• d2oyqb1 appears in the current release, SCOPe 2.08