SCOPe 2.05: Domain d2ocdb_: 2ocd B:

Lineage for d2ocdb_ (2ocd B:)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.88: Glutaminase/Asparaginase [53773] (1 superfamily)
   consists of two non-similar alpha/beta domains, 3 layers (a/b/a) each
   Domain 1 has mixed beta-sheet of 6 strands, order 213456, strand 6 is antiparallel to the rest; left-handed crossover connection between strands 4 and 5
   Domain 2 has parallel beta-sheet of 4 strands, order 1234

4. Superfamily c.88.1: Glutaminase/Asparaginase [53774] (2 families)

5. Family c.88.1.1: Glutaminase/Asparaginase [53775] (4 proteins)
   automatically mapped to Pfam PF00710

6. Protein Asparaginase type II [53776] (4 species)

7. Species Vibrio cholerae [TaxId:666] [159797] (1 PDB entry)
   Uniprot Q9KQK3 2-337

8. Domain d2ocdb_: 2ocd B: [148724]
   automated match to d2ocda1
   complexed with act, gol

Details for d2ocdb_

PDB Entry: 2ocd, 2.45 Å

PDB Description: Crystal structure of L-asparaginase I from Vibrio cholerae O1 biovar eltor str. N16961

PDB Compounds: (B:) L-asparaginase I

SCOPe Domain Sequences for d2ocdb_:

Sequence, based on SEQRES records:

>d2ocdb_ c.88.1.1 (B:) Asparaginase type II {Vibrio cholerae [TaxId: 666]}
arkhiyiaytggtigmkksdhgyvpvagfmekqlasmpefhrpemplftiheydplmdss
dmtpadwqliaddiaanydkydgfvilhgtdtmaytasalsfmfenlgkpvivtgsqipl
adlrsdgqanllnalhvaanypinevtlffnnrlmrgnrsrkshadgfsafsspnlppll
eaginielstnvkvdekpsgefkvnpitpqpigvitmypgishevirntllqpvnamill
tfgvgnapqnpellaqlkaasergvivvnltqclagkvnmggyatgcaladagvisgydm
tpeaalaklhyllsqnlsyeevkakmqqvlrgemtl

Sequence, based on observed residues (ATOM records):

>d2ocdb_ c.88.1.1 (B:) Asparaginase type II {Vibrio cholerae [TaxId: 666]}
arkhiyiaytggtigmkksdvpvagfmekqlasmpefhrpemplftiheydplmdssdmt
padwqliaddiaanydkydgfvilhgtdtmaytasalsfmfenlgkpvivtgsqipladl
rsdgqanllnalhvaanypinevtlffnnrlmrgnrsrkshadgfsafsspnlpplleag
inielstnvkvdekpsgefkvnpitpqpigvitmypgishevirntllqpvnamilltfg
vgnapqnpellaqlkaasergvivvnltqclagkvnmggyatgcaladagvisgydmtpe
aalaklhyllsqnlsyeevkakmqqvlrgemtl

Timeline for d2ocdb_:

• d2ocdb_ first appeared in SCOP 1.75, called d2ocdb1
  
• d2ocdb_ appears in SCOPe 2.04
  
• d2ocdb_ appears in SCOPe 2.06
  
• d2ocdb_ appears in the current release, SCOPe 2.08