SCOPe 2.05: Family c.88.1.1: Glutaminase/Asparaginase

Lineage for Family c.88.1.1: Glutaminase/Asparaginase

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.88: Glutaminase/Asparaginase [53773] (1 superfamily)
   consists of two non-similar alpha/beta domains, 3 layers (a/b/a) each
   Domain 1 has mixed beta-sheet of 6 strands, order 213456, strand 6 is antiparallel to the rest; left-handed crossover connection between strands 4 and 5
   Domain 2 has parallel beta-sheet of 4 strands, order 1234

4. Superfamily c.88.1: Glutaminase/Asparaginase [53774] (2 families)

5. Family c.88.1.1: Glutaminase/Asparaginase [53775] (4 proteins)
   automatically mapped to Pfam PF00710

Proteins:

1. Asparaginase type II [53776] (4 species)

   1. Species Erwinia chrysanthemi [TaxId:556] [53779] (8 PDB entries)

   2. Species Escherichia coli [TaxId:562] [53777] (7 PDB entries)

   3. Species Vibrio cholerae [TaxId:666] [159797] (1 PDB entry)
      Uniprot Q9KQK3 2-337

   4. Species Wolinella succinogenes [TaxId:844] [53778] (1 PDB entry)

2. Glutaminase-asparaginase [53780] (2 species)

   1. Species Acinetobacter glutaminasificans [TaxId:474] [53781] (1 PDB entry)

   2. Species Pseudomonas sp., 7A [TaxId:306] [53782] (4 PDB entries)

3. Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD [142776] (2 species)

   1. Species Methanobacterium thermoautotrophicum [TaxId:145262] [142778] (1 PDB entry)
      Uniprot O26802 84-435

   2. Species Pyrococcus abyssi [TaxId:29292] [142777] (1 PDB entry)
      Uniprot Q9V0T9 76-438

4. automated matches [190446] (6 species)
   not a true protein

   1. Species Escherichia coli [TaxId:562] [225264] (3 PDB entries)

   2. Species Methanothermobacter thermautotrophicus [TaxId:145262] [255110] (1 PDB entry)

   3. Species Pectobacterium atrosepticum [TaxId:218491] [255007] (1 PDB entry)

   4. Species Pectobacterium atrosepticum [TaxId:29471] [187353] (2 PDB entries)

   5. Species Pectobacterium carotovorum [TaxId:554] [188521] (1 PDB entry)

   6. Species Yersinia pestis [TaxId:214092] [189425] (1 PDB entry)

More info for Family c.88.1.1: Glutaminase/Asparaginase

Timeline for Family c.88.1.1: Glutaminase/Asparaginase:

• Family c.88.1.1: Glutaminase/Asparaginase first appeared (with stable ids) in SCOP 1.55
  
• Family c.88.1.1: Glutaminase/Asparaginase appears in SCOPe 2.04
  
• Family c.88.1.1: Glutaminase/Asparaginase appears in SCOPe 2.06
  
• Family c.88.1.1: Glutaminase/Asparaginase appears in the current release, SCOPe 2.08