SCOPe 2.04: Domain d2bvma_: 2bvm A:

Lineage for d2bvma_ (2bvm A:)

1. Root: SCOPe 2.04

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.68: Nucleotide-diphospho-sugar transferases [53447] (1 superfamily)
   3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest

4. Superfamily c.68.1: Nucleotide-diphospho-sugar transferases [53448] (20 families)

5. Family c.68.1.22: Glycosylating toxin catalytic domain-like [159726] (4 proteins)
   contains Glycosyltransferase sugar-binding region containing DXD motif, Pfam PF04488

6. Protein automated matches [190532] (2 species)
   not a true protein

7. Species Clostridium difficile [TaxId:1496] [187493] (1 PDB entry)

8. Domain d2bvma_: 2bvm A: [146220]
   automated match to d2bvla1
   complexed with glc, mn, so4, udp

Details for d2bvma_

PDB Entry: 2bvm, 2.55 Å

PDB Description: crystal structure of the catalytic domain of toxin b from clostridium difficile in complex with udp, glc and manganese ion

PDB Compounds: (A:) toxin b

SCOPe Domain Sequences for d2bvma_:

Sequence; same for both SEQRES and ATOM records:

>d2bvma_ c.68.1.22 (A:) automated matches {Clostridium difficile [TaxId: 1496]}
mslvnrkqlekmanvrfrtqedeyvaildaleeyhnmsentvvekylklkdinsltdici
dtykksgrnkalkkfkeylvtevlelknnnltpveknlhfvwiggqindtainyinqwkd
vnsdynvnvfydsnaflintlkktvvesaindtlesfrenlndprfdynkffrkrmeiiy
dkqknfinyykaqreenpeliiddivktylsneyskeidelntyieeslnkitqnsgndv
rnfgefkngesfnlyeqelverwnlaaasdilrisalkeiggmyldvdmlpgiqpdlfes
iekpssvtvdfwemtkleaimkykeyipeytsehfdmldeevqssfesvlasksdkseif
sslgdmeasplevkiafnskgiinqglisvkdsycsnlivkqienrykilnnslnpaise
dndfntttntfidsimaeanadngrfmmelgkylrvgffpdvkttinlsgpeayaaayqd
llmfkegsmnihlieadlrnfeisktnisqsteqemaslwsfddarakaqfeeykrnyfe
ga

Timeline for d2bvma_:

• d2bvma_ first appeared in SCOP 1.75, called d2bvma1
  
• d2bvma_ appears in SCOPe 2.03
  
• d2bvma_ appears in SCOPe 2.05
  
• d2bvma_ appears in the current release, SCOPe 2.08