SCOPe 2.04: Domain d2ghoc1: 2gho C:1-1114

Lineage for d2ghoc1 (2gho C:1-1114)

1. Root: SCOPe 2.04

2. Class e: Multi-domain proteins (alpha and beta) [56572] (68 folds)

3. Fold e.29: beta and beta-prime subunits of DNA dependent RNA-polymerase [64483] (1 superfamily)
   Multidomain subunits of complex domain organization

4. Superfamily e.29.1: beta and beta-prime subunits of DNA dependent RNA-polymerase [64484] (2 families)
   The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit

5. Family e.29.1.1: RNA-polymerase beta [64485] (3 proteins)

6. Protein RNA-polymerase beta [64488] (2 species)

7. Species Thermus aquaticus [TaxId:271] [64489] (4 PDB entries)

8. Domain d2ghoc1: 2gho C:1-1114 [145196]
   Other proteins in same PDB: d2ghoa1, d2ghoa2, d2ghob1, d2ghob2, d2ghod1
   automatically matched to 1YNJ C:1-1114
   protein/RNA complex

Details for d2ghoc1

PDB Entry: 2gho, 5 Å

PDB Description: recombinant thermus aquaticus rna polymerase for structural studies

PDB Compounds: (C:) DNA-directed RNA polymerase beta chain

SCOPe Domain Sequences for d2ghoc1:

Sequence; same for both SEQRES and ATOM records:

>d2ghoc1 e.29.1.1 (C:1-1114) RNA-polymerase beta {Thermus aquaticus [TaxId: 271]}
meikrfgrireviplpplteiqvesykkalqadvppekrenvgiqaafketfpieegdkg
kgglvldfleyrigdppfsqdecrekdltyqaplyarlqlihkdtglikedevflghlpl
mtedgsfiingadrvivsqihrspgvyftpdparpgryiasiiplpkrgpwidleveasg
vvtmkvnkrkfplvlllrvlgydqetlvrelsaygdlvqglldeavlamrpeeamvrlft
llrpgdppkkdkalaylfglladpkrydlgeagrykaeeklgvglsgrtlvrfedgefkd
evflptlrylfaltagvpghevddidhlgnrrirtvgelmadqfrvglarlargvrermv
mgspdtltpaklvnsrpleaalreffsrsqlsqfkdetnplsslrhkrrisalgpggltr
eragfdvrdvhrthygricpvetpeganiglitslaayarvdalgfirtpyrrvkngvvt
eevvymtaseedrytiaqantplegdriatdrvvarrrgepvivapeevefmdvspkqvf
slntnlipflehddanralmgsnmqtqavpliraqapvvmtgleervvrdslaalyaeed
gevvkvdgtriavryedgrlvehplrryarsnqgtafdqrprvrvgqrvkkgdlladgpa
seegflalgqnvlvaimpfdgynfedaiviseellkrdfytsihieryeieardtklgpe
ritrdiphlseaalrdldeegivrigaevkpgdilvgrtsfkgeqepspeerllrsifge
kardvkdtslrvppgeggivvgrlrlrrgdpgvelkpgvrevvrvfvaqkrklqvgdkla
nrhgnkgvvakilpvedmphlpdgtpvdvilnplgvpsrmnlgqilethlglagyflgqr
yispvfdgatepeikellaeafnlyfgkrqgegfgvdkrekevlaraeklglvspgkspe
eqlkelfdlgkvvlydgrtgepfegpivvgqmfimklyhmvedkmharstgpyslitqqp
lggkaqfggqrfgemevwaleaygaahtlqemltiksddiegrnaayqaiikgedvpeps
vpesfrvlvkelqalaldvqtldekdnpvdifeg

Timeline for d2ghoc1:

• d2ghoc1 first appeared in SCOP 1.75
  
• d2ghoc1 appears in SCOPe 2.03
  
• d2ghoc1 appears in SCOPe 2.05
  
• d2ghoc1 appears in the current release, SCOPe 2.08