SCOPe 2.07: Protein: D-alanyl-D-alanine carboxypeptidase Dac

Lineage for Protein: D-alanyl-D-alanine carboxypeptidase Dac

Root: SCOPe 2.07
Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds)
Fold e.3: beta-lactamase/transpeptidase-like [56600] (1 superfamily)
contains a cluster of helices and an alpha+beta sandwich
Superfamily e.3.1: beta-lactamase/transpeptidase-like [56601] (4 families)

Family e.3.1.3: Dac-like [144040] (3 proteins)
Pfam PF02113; D-Ala-D-Ala carboxypeptidase 3 (S13) family; contains a large insertion comprising two subdomains: (d1) aplha+beta with topological similarity to one subunit of the DTD-like family (69501) and (d2) six-stranded beta-sandwich with a crossed-loop topology

Protein D-alanyl-D-alanine carboxypeptidase Dac [144043] (1 species)

Species:

Actinomadura sp. [TaxId:1989] [144044] (19 PDB entries)
Uniprot P39045 50-516
1. Domains for 1w79:
  1. Domain d1w79a1: 1w79 A:1-467 [120680]
    complexed with mg, so4
  2. Domain d1w79b1: 1w79 B:1-466 [120681]
    automatically matched to 1W79 A:1-467
    complexed with mg, so4
  3. Domain d1w79c1: 1w79 C:1-466 [120682]
    automatically matched to 1W79 A:1-467
    complexed with mg, so4
  4. Domain d1w79d1: 1w79 D:1-467 [120683]
    automatically matched to 1W79 A:1-467
    complexed with mg, so4
2. Domains for 1w8q:
  1. Domain d1w8qa_: 1w8q A: [120730]
    automated match to d1w79a1
    complexed with co, so4
  2. Domain d1w8qb_: 1w8q B: [120731]
    automated match to d1w79a1
    complexed with co, so4
  3. Domain d1w8qc_: 1w8q C: [120732]
    automated match to d1w79a1
    complexed with co, so4
  4. Domain d1w8qd_: 1w8q D: [120733]
    automated match to d1w79a1
    complexed with co, so4
3. Domains for 1w8y:
  1. Domain d1w8ya_: 1w8y A: [120754]
    automated match to d1w79a1
    complexed with mg, ncf, so4
  2. Domain d1w8yb_: 1w8y B: [120755]
    automated match to d1w79a1
    complexed with mg, ncf, so4
  3. Domain d1w8yc_: 1w8y C: [120756]
    automated match to d1w79a1
    complexed with mg, ncf, so4
  4. Domain d1w8yd_: 1w8y D: [120757]
    automated match to d1w79a1
    complexed with mg, ncf, so4
4. Domains for 2vgj:
  1. Domain d2vgja_: 2vgj A: [206349]
    automated match to d1w79a1
    complexed with mg, rec, so4
  2. Domain d2vgjb_: 2vgj B: [206350]
    automated match to d1w79a1
    complexed with mg, rec, so4
  3. Domain d2vgjc_: 2vgj C: [206351]
    automated match to d1w79a1
    complexed with mg, rec, so4
  4. Domain d2vgjd_: 2vgj D: [206352]
    automated match to d1w79a1
    complexed with mg, rec, so4
5. Domains for 2vgk:
  1. Domain d2vgka_: 2vgk A: [206353]
    automated match to d1w79a1
    complexed with mg, rez, so4
  2. Domain d2vgkb_: 2vgk B: [206354]
    automated match to d1w79a1
    complexed with mg, rez, so4
  3. Domain d2vgkc_: 2vgk C: [206355]
    automated match to d1w79a1
    complexed with mg, rez, so4
  4. Domain d2vgkd_: 2vgk D: [206356]
    automated match to d1w79a1
    complexed with mg, rez, so4
6. Domains for 2wke:
  1. Domain d2wkea_: 2wke A: [198513]
    automated match to d2wked_
    complexed with biy, co, so4
  2. Domain d2wkeb_: 2wke B: [198514]
    automated match to d2wked_
    complexed with biy, co, so4
  3. Domain d2wkec_: 2wke C: [198515]
    automated match to d2wked_
    complexed with biy, co, so4
  4. Domain d2wked_: 2wke D: [169400]
    automated match to d1w79a1
    complexed with biy, co, so4
7. Domains for 2xk1:
  1. Domain d2xk1a_: 2xk1 A: [207259]
    automated match to d2wked_
    complexed with co, ewb, so4
  2. Domain d2xk1b_: 2xk1 B: [207260]
    automated match to d2wked_
    complexed with co, ewb, so4
  3. Domain d2xk1c_: 2xk1 C: [207261]
    automated match to d2wked_
    complexed with co, ewb, so4
  4. Domain d2xk1d_: 2xk1 D: [207262]
    automated match to d2wked_
    complexed with co, ewb, so4
8. Domains for 2xln:
  1. Domain d2xlna_: 2xln A: [207268]
    automated match to d1w79a1
    complexed with co, ewa, so4
  2. Domain d2xlnb_: 2xln B: [207269]
    automated match to d1w79a1
    complexed with co, ewa, so4
  3. Domain d2xlnc_: 2xln C: [207270]
    automated match to d1w79a1
    complexed with co, ewa, so4
  4. Domain d2xlnd_: 2xln D: [207271]
    automated match to d1w79a1
    complexed with co, ewa, so4
9. Domains for 2y4a:
  1. Domain d2y4aa_: 2y4a A: [207469]
    automated match to d2wked_
    complexed with bh6, mg, so4
  2. Domain d2y4ab_: 2y4a B: [207470]
    automated match to d2wked_
    complexed with bh6, mg, so4
  3. Domain d2y4ac_: 2y4a C: [207471]
    automated match to d2wked_
    complexed with bh6, mg, so4
  4. Domain d2y4ad_: 2y4a D: [207472]
    automated match to d2wked_
    complexed with bh6, mg, so4
10. Domains for 2y55:
  1. Domain d2y55a_: 2y55 A: [207473]
    automated match to d2wked_
    complexed with acn, fp5, mg, so4
  2. Domain d2y55b_: 2y55 B: [207474]
    automated match to d2wked_
    complexed with acn, fp5, mg, so4
  3. Domain d2y55c_: 2y55 C: [207475]
    automated match to d2wked_
    complexed with acn, fp5, mg, so4
  4. Domain d2y55d_: 2y55 D: [207476]
    automated match to d2wked_
    complexed with acn, fp5, mg, so4
11. Domains for 2y59:
  1. Domain d2y59a_: 2y59 A: [207477]
    automated match to d2wked_
    complexed with mg, so4, za3
  2. Domain d2y59b_: 2y59 B: [207478]
    automated match to d2wked_
    complexed with mg, so4, za3
  3. Domain d2y59c_: 2y59 C: [207479]
    automated match to d2wked_
    complexed with mg, so4, za3
  4. Domain d2y59d_: 2y59 D: [207480]
    automated match to d2wked_
    complexed with mg, so4, za3
12. Domains for 2y5o:
  1. Domain d2y5oa_: 2y5o A: [304699]
    automated match to d1w79a1
    complexed with 33d, acn, fp5, mes, mg, so4
  2. Domain d2y5ob_: 2y5o B: [304700]
    automated match to d1w79a1
    complexed with 33d, acn, fp5, mes, mg, so4
  3. Domain d2y5oc_: 2y5o C: [304701]
    automated match to d1w79a1
    complexed with 33d, acn, fp5, mes, mg, so4
  4. Domain d2y5od_: 2y5o D: [304702]
    automated match to d1w79a1
    complexed with 33d, acn, fp5, mes, mg, so4
13. Domains for 2y5r:
  1. Domain d2y5ra_: 2y5r A: [304703]
    automated match to d1w79a1
    complexed with bo7
  2. Domain d2y5rb_: 2y5r B: [304704]
    automated match to d1w79a1
    complexed with bo7
  3. Domain d2y5rc_: 2y5r C: [304705]
    automated match to d1w79a1
    complexed with bo7
  4. Domain d2y5rd_: 2y5r D: [304706]
    automated match to d1w79a1
    complexed with bo7
14. Domains for 3zcz:
  1. Domain d3zcza_: 3zcz A: [201286]
    automated match to d3zczd_
    complexed with mg, so4, tfr
  2. Domain d3zczb_: 3zcz B: [201287]
    automated match to d3zczd_
    complexed with mg, so4, tfr
  3. Domain d3zczc_: 3zcz C: [201288]
    automated match to d3zczd_
    complexed with mg, so4, tfr
  4. Domain d3zczd_: 3zcz D: [196732]
    automated match to d1w79a1
    complexed with mg, so4, tfr
15. Domains for 3zvt:
  1. Domain d3zvta_: 3zvt A: [250871]
    automated match to d1w79b1
    complexed with b07, mg, so4
  2. Domain d3zvtb_: 3zvt B: [250872]
    automated match to d1w79b1
    complexed with b07, mg, so4
  3. Domain d3zvtc_: 3zvt C: [250873]
    automated match to d1w79b1
    complexed with b07, mg, so4
  4. Domain d3zvtd_: 3zvt D: [250874]
    automated match to d1w79b1
    complexed with b07, mg, so4
16. Domains for 3zvw:
  1. Domain d3zvwa_: 3zvw A: [218543]
    automated match to d2wked_
    complexed with 33d, acn, fp5, mes, mg, so4
  2. Domain d3zvwb_: 3zvw B: [218544]
    automated match to d2wked_
    complexed with 33d, acn, fp5, mes, mg, so4
  3. Domain d3zvwc_: 3zvw C: [218545]
    automated match to d2wked_
    complexed with 33d, acn, fp5, mes, mg, so4
  4. Domain d3zvwd_: 3zvw D: [218546]
    automated match to d2wked_
    complexed with 33d, acn, fp5, mes, mg, so4
17. Domains for 4b4x:
  1. Domain d4b4xa_: 4b4x A: [219324]
    automated match to d2wked_
    complexed with hqz, mg, so4
  2. Domain d4b4xb_: 4b4x B: [219325]
    automated match to d2wked_
    complexed with hqz, mg, so4
  3. Domain d4b4xc_: 4b4x C: [219326]
    automated match to d2wked_
    complexed with hqz, mg, so4
  4. Domain d4b4xd_: 4b4x D: [219327]
    automated match to d2wked_
    complexed with hqz, mg, so4
18. Domains for 4b4z:
  1. Domain d4b4za_: 4b4z A: [219328]
    automated match to d2wked_
    complexed with bsf, mg, so4
  2. Domain d4b4zb_: 4b4z B: [219329]
    automated match to d2wked_
    complexed with bsf, mg, so4
  3. Domain d4b4zc_: 4b4z C: [219330]
    automated match to d2wked_
    complexed with bsf, mg, so4
  4. Domain d4b4zd_: 4b4z D: [219331]
    automated match to d2wked_
    complexed with bsf, mg, so4
19. Domains for 4ben:
  1. Domain d4bena_: 4ben A: [201615]
    automated match to d2wked_
    complexed with gol, im2, mes, mg, so4
  2. Domain d4benb_: 4ben B: [196660]
    automated match to d1w79a1
    complexed with gol, im2, mes, mg, so4
  3. Domain d4benc_: 4ben C: [201616]
    automated match to d2wked_
    complexed with gol, im2, mes, mg, so4
  4. Domain d4bend_: 4ben D: [201617]
    automated match to d2wked_
    complexed with gol, im2, mes, mg, so4

More info for Protein D-alanyl-D-alanine carboxypeptidase Dac from e.3.1.3: Dac-like

Timeline for Protein D-alanyl-D-alanine carboxypeptidase Dac from e.3.1.3: Dac-like:

Protein D-alanyl-D-alanine carboxypeptidase Dac from e.3.1.3: Dac-like first appeared in SCOP 1.73
Protein D-alanyl-D-alanine carboxypeptidase Dac from e.3.1.3: Dac-like appears in SCOPe 2.06
Protein D-alanyl-D-alanine carboxypeptidase Dac from e.3.1.3: Dac-like appears in the current release, SCOPe 2.08