Lineage for d2nxyc1 (2nxy C:2001-2111)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2017117Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 protein domains)
  6. 2018294Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2018454Species Human (Homo sapiens), cluster 3.2 [TaxId:9606] [88523] (31 PDB entries)
  8. 2018456Domain d2nxyc1: 2nxy C:2001-2111 [138747]
    Other proteins in same PDB: d2nxya1, d2nxyb1, d2nxyb2, d2nxyc2, d2nxyd1, d2nxyd2
    automated match to d1rz8a1
    complexed with hez, nag, trs

Details for d2nxyc1

PDB Entry: 2nxy (more details), 2 Å

PDB Description: HIV-1 gp120 Envelope Glycoprotein(S334A) Complexed with CD4 and Antibody 17b
PDB Compounds: (C:) antibody 17b, light chain

SCOPe Domain Sequences for d2nxyc1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2nxyc1 b.1.1.1 (C:2001-2111) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

SCOPe Domain Coordinates for d2nxyc1:

Click to download the PDB-style file with coordinates for d2nxyc1.
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Timeline for d2nxyc1: