SCOPe 2.08: Domain d2gida1: 2gid A:60-221

Lineage for d2gida1 (2gid A:60-221)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.18: ssDNA-binding transcriptional regulator domain [54446] (1 superfamily)
   helix-swapped dimer of beta(4)-alpha motifs

4. Superfamily d.18.1: ssDNA-binding transcriptional regulator domain [54447] (5 families)

5. Family d.18.1.4: Guide RNA binding protein gBP [143043] (2 proteins)
   includes PfamB PB080318 and PB073991; forms heterooligomers; similar subunit and oligomeric structures to the Plant transcriptional regulator family
   automatically mapped to Pfam PF09387

6. Protein Guide RNA binding protein gBP25 [143046] (1 species)
   Mitochondrial RNA-binding protein 2, MRP2

7. Species Trypanosome (Trypanosoma brucei) [TaxId:5691] [143047] (2 PDB entries)
   Uniprot Q952G2 56-221

8. Domain d2gida1: 2gid A:60-221 [135232]
   Other proteins in same PDB: d2gidb1, d2gidd1, d2gidj1, d2gidk1
   automatically matched to 2GIA A:56-221

Details for d2gida1

PDB Entry: 2gid, 3.35 Å

PDB Description: Crystal structures of trypanosoma bruciei MRP1/MRP2

PDB Compounds: (A:) mitochondrial RNA-binding protein 2

SCOPe Domain Sequences for d2gida1:

Sequence, based on SEQRES records:

>d2gida1 d.18.1.4 (A:60-221) Guide RNA binding protein gBP25 {Trypanosome (Trypanosoma brucei) [TaxId: 5691]}
slaqqrarraqlppafdvvhwndedisrghllrvlhrdtfvvldyhrqarmlteegnkae
rvvsvmlpavytarflavlegrsekvevhsrytnatftpnpaapytftlkctstrpaqqk
qqvageegdetfewtvefdvaeslmlqrfltqalhyntgfar

Sequence, based on observed residues (ATOM records):

>d2gida1 d.18.1.4 (A:60-221) Guide RNA binding protein gBP25 {Trypanosome (Trypanosoma brucei) [TaxId: 5691]}
slaqqrarraqlppafdvvhwndedisrghllrvlhrdtfvvldyhrqarmlteegnkae
rvvsvmlpavytarflavlegrsekvevhsrytnatftpnpaapytftlkctstrpdetf
ewtvefdvaeslmlqrfltqalhyntgfar

Timeline for d2gida1:

• d2gida1 first appeared in SCOP 1.73
  
• d2gida1 appears in SCOPe 2.07