Lineage for d2fx9m1 (2fx9 M:1-107)

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 651987Fold b.1: Immunoglobulin-like beta-sandwich [48725] (27 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 651988Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 651989Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (29 proteins)
  6. 652980Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 653125Species Human (Homo sapiens), cluster 3.2 [TaxId:9606] [88523] (29 PDB entries)
  8. 653136Domain d2fx9m1: 2fx9 M:1-107 [134302]
    Other proteins in same PDB: d2fx9h1, d2fx9h2, d2fx9i1, d2fx9i2, d2fx9l2, d2fx9m2
    automatically matched to d1rhha1
    complexed with orq

Details for d2fx9m1

PDB Entry: 2fx9 (more details), 2.1 Å

PDB Description: Crystal structure of hiv-1 neutralizing human fab 4e10 in complex with a thioether-linked peptide encompassing the 4e10 epitope on gp41
PDB Compounds: (M:) Fab 4E10

SCOP Domain Sequences for d2fx9m1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2fx9m1 b.1.1.1 (M:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

SCOP Domain Coordinates for d2fx9m1:

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Timeline for d2fx9m1: