SCOPe 2.07: Domain d2dnta1: 2dnt A:8-72

Lineage for d2dnta1 (2dnt A:8-72)

1. Root: SCOPe 2.07

2. Class b: All beta proteins [48724] (178 folds)

3. Fold b.34: SH3-like barrel [50036] (21 superfamilies)
   barrel, partly opened; n*=4, S*=8; meander
   the last strand is interrupted by a turn of 3-10 helix

4. Superfamily b.34.13: Chromo domain-like [54160] (4 families)
   SH3-like barrel is capped by a C-terminal helix

5. Family b.34.13.2: Chromo domain [54165] (8 proteins)
   lacks the SH3-like barrel first strand that can be complemented by bound peptide ligand; in shadow chromo domain the corresponding site is altered by insertion; similarity to the IL8-like fold

6. Protein Chromodomain protein, Y-like isoform [141218] (1 species)

7. Species Human (Homo sapiens) [TaxId:9606] [141219] (1 PDB entry)
   Uniprot Q32NC5 1-66

8. Domain d2dnta1: 2dnt A:8-72 [131593]
   Other proteins in same PDB: d2dnta2, d2dnta3

Details for d2dnta1

PDB Entry: 2dnt

PDB Description: solution structure of rsgi ruh-064, a chromo domain from human cdna

PDB Compounds: (A:) Chromodomain protein, Y chromosome-like, isoform b

SCOPe Domain Sequences for d2dnta1:

Sequence; same for both SEQRES and ATOM records:

>d2dnta1 b.34.13.2 (A:8-72) Chromodomain protein, Y-like isoform {Human (Homo sapiens) [TaxId: 9606]}
maseelyeverivdkrknkkgkteylvrwkgydseddtwepeqhlvnceeyihdfnrrht
ekqke

Timeline for d2dnta1:

• d2dnta1 first appeared in SCOP 1.73
  
• d2dnta1 appears in SCOPe 2.06
  
• d2dnta1 appears in the current release, SCOPe 2.08