SCOPe 2.08: Domain d2c1ia1: 2c1i A:268-463

Lineage for d2c1ia1 (2c1i A:268-463)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.6: 7-stranded beta/alpha barrel [51988] (3 superfamilies)
   variant of beta/alpha barrel; parallel beta-sheet barrel, closed, n=7, S=8; strand order 1234567; some members may have fewer strands

4. Superfamily c.6.2: Glycoside hydrolase/deacetylase [88713] (9 families)
   in the different families beta-barrels are similarly distorted but may vary in the number of strands

5. Family c.6.2.3: NodB-like polysaccharide deacetylase [89559] (7 proteins)
   variant of beta/alpha barrel; parallel beta-sheet barrel, closed, n=6, S=8; strand order 123456

6. Protein Peptidoglycan GlcNAc deacetylase C-terminal domain [141959] (1 species)

7. Species Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [141960] (2 PDB entries)
   Uniprot Q8DP63 268-463

8. Domain d2c1ia1: 2c1i A:268-463 [129636]
   Other proteins in same PDB: d2c1ia2
   complexed with mes, so4, zn; mutant

Details for d2c1ia1

PDB Entry: 2c1i, 1.35 Å

PDB Description: structure of streptococcus pneumoniae peptidoglycan deacetylase (sppgda) d 275 n mutant.

PDB Compounds: (A:) peptidoglycan glcnac deacetylase

SCOPe Domain Sequences for d2c1ia1:

Sequence; same for both SEQRES and ATOM records:

>d2c1ia1 c.6.2.3 (A:268-463) Peptidoglycan GlcNAc deacetylase C-terminal domain {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}
kvvaltfndgpnpattpqvletlakydikatffvlgknvsgnedlvkrikseghvvgnhs
wshpilsqlsldeakkqitdtedvltkvlgsssklmrppygaitddirnsldlsfimwdv
dsldwkskneasilteiqhqvangsivlmhdihsptvnalprvieylknqgytfvtipem
lntrlkahelyysrde

Timeline for d2c1ia1:

• d2c1ia1 first appeared in SCOP 1.73
  
• d2c1ia1 appears in SCOPe 2.07