SCOPe 2.07: Domain d2b5dx2: 2b5d X:1-404

Lineage for d2b5dx2 (2b5d X:1-404)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.6: 7-stranded beta/alpha barrel [51988] (3 superfamilies)
   variant of beta/alpha barrel; parallel beta-sheet barrel, closed, n=7, S=8; strand order 1234567; some members may have fewer strands

4. Superfamily c.6.2: Glycoside hydrolase/deacetylase [88713] (9 families)
   in the different families beta-barrels are similarly distorted but may vary in the number of strands

5. Family c.6.2.4: AmyC N-terminal domain-like [102189] (3 proteins)
   automatically mapped to Pfam PF03065

6. Protein Alpha-amylase AmyC [141951] (1 species)

7. Species Thermotoga maritima [TaxId:2336] [141952] (1 PDB entry)
   Uniprot A1GKL6 1-404

8. Domain d2b5dx2: 2b5d X:1-404 [127887]
   Other proteins in same PDB: d2b5dx1

Details for d2b5dx2

PDB Entry: 2b5d, 2.2 Å

PDB Description: Crystal structure of the novel alpha-amylase AmyC from Thermotoga maritima

PDB Compounds: (X:) alpha-amylase

SCOPe Domain Sequences for d2b5dx2:

Sequence; same for both SEQRES and ATOM records:

>d2b5dx2 c.6.2.4 (X:1-404) Alpha-amylase AmyC {Thermotoga maritima [TaxId: 2336]}
mrgkiliflhahlpyvhhpeydhfleerwlfeaitetyipllmmfdeiedfrltmsitpp
lmemlssrdlqekyerhmeklielankevertkkehplkhkmakfyrehfekilnvfrsy
dgnilegfkkyqetgkleivtcnathaflplyqmypevvnaqitvgvknyekhmkkhprg
iwlaecgyyqgldlylaqnnveyffvdshafwfadeqprygvyrpimtpsgvfafardpe
sseqvwsaavgypgdpryrefyrdigfdremeyikdyidpsgvrintgikyhritsksld
asqkeyydidlameaveehardflhkkesqarrlmdimgvepvivapfdaelfghwwfeg
vfflkrffelvneskdlklvtasevidtleevqiatpadsswga

Timeline for d2b5dx2:

• d2b5dx2 first appeared in SCOP 1.73
  
• d2b5dx2 appears in SCOPe 2.06
  
• d2b5dx2 appears in the current release, SCOPe 2.08