SCOPe 2.04: Domain d1vbkb2: 1vbk B:1-175

Lineage for d1vbkb2 (1vbk B:1-175)

1. Root: SCOPe 2.04

2. Class d: Alpha and beta proteins (a+b) [53931] (380 folds)

3. Fold d.308: THUMP domain [143436] (1 superfamily)
   contains mixed 8-stranded beta-sheet, folded into a half-barrel and covered with 4 helices on the outside; order 32148756; strands 5, 6 and 7 are parallel

4. Superfamily d.308.1: THUMP domain-like [143437] (3 families)
   predicted RNA-binding function

5. Family d.308.1.1: THUMP domain [143438] (2 proteins)
   Pfam PF02926

6. Protein Hypothetical protein PH1313, N-terminal domain [143441] (1 species)

7. Species Pyrococcus horikoshii [TaxId:53953] [143442] (1 PDB entry)
   Uniprot O59053 1-175

8. Domain d1vbkb2: 1vbk B:1-175 [119960]
   Other proteins in same PDB: d1vbka1, d1vbkb1
   automated match to d1vbka2
   complexed with mrd

Details for d1vbkb2

PDB Entry: 1vbk, 1.9 Å

PDB Description: Crystal structure of PH1313 from Pyrococcus horikoshii Ot3

PDB Compounds: (B:) hypothetical protein PH1313

SCOPe Domain Sequences for d1vbkb2:

Sequence, based on SEQRES records:

>d1vbkb2 d.308.1.1 (B:1-175) Hypothetical protein PH1313, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
mnvvivrygeigtksrqtrswfekilmnnirealvteevpykeifsrhgriivktnspke
aanvlvrvfgivsispameveaslekinrtallmfrkkakevgkerpkfrvtarritkef
pldsleiqakvgeyilnnencevdlknydieigieimqgkayiytekikgwgglp

Sequence, based on observed residues (ATOM records):

>d1vbkb2 d.308.1.1 (B:1-175) Hypothetical protein PH1313, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
mnvvivryksrqtrswfekilmnnirealvteevpykeifsrhgriivktnspkeaanvl
vrvfgivsispameveaslekinrtallmfrkkakevgkerpkfrvtarritkefpldsl
eiqakvgeyilnnencevdlknydieigieimqgkayiytekikgwgglp

Timeline for d1vbkb2:

• d1vbkb2 first appeared in SCOP 1.73
  
• d1vbkb2 appears in SCOPe 2.03
  
• d1vbkb2 appears in SCOPe 2.05
  
• d1vbkb2 appears in the current release, SCOPe 2.08