SCOPe 2.08: Domain d1v0fb1: 1v0f B:245-760

Lineage for d1v0fb1 (1v0f B:245-760)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.68: 6-bladed beta-propeller [50938] (11 superfamilies)
   consists of six 4-stranded beta-sheet motifs; meander

4. Superfamily b.68.1: Sialidases [50939] (3 families)

5. Family b.68.1.2: Endo-alpha-sialidase [117276] (2 proteins)
   possibly related by the other family by circular permutation; includes extra N-terminal domain [dN: alpha/beta ] and insert domain [dI: beta-barrel, similar to the Reductase/isomerase/elongation factor common domain (50412)]

6. Protein Endo-alpha-sialidase [117277] (1 species)

7. Species Bacteriophage K1F [TaxId:344021] [117278] (2 PDB entries)
   Uniprot Q04830 245-909

8. Domain d1v0fb1: 1v0f B:245-760 [113480]
   Other proteins in same PDB: d1v0fa2, d1v0fb2, d1v0fc2, d1v0fd2, d1v0fe2, d1v0ff2
   complexed with po4, slb

Details for d1v0fb1

PDB Entry: 1v0f, 2.55 Å

PDB Description: endosialidase of bacteriophage k1f in complex with oligomeric alpha-2, 8-sialic acid

PDB Compounds: (B:) endo-alpha-sialidase

SCOPe Domain Sequences for d1v0fb1:

Sequence; same for both SEQRES and ATOM records:

>d1v0fb1 b.68.1.2 (B:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]}
sakgdgvtddtaaltsalndtpvgqkingngktykvtslpdisrfintrfvyeripgqpl
yyaseefvqgelfkitdtpyynawpqdkafvyenviyapymgsdrhgvsrlhvswvksgd
dgqtwstpewltdlhpdyptvnyhcmsmgvcrnrlfamietrtlaknaltncalwdrpms
rslhltggitkaanqryatihvpdhglfvgdfvnfsnsavtgvsgdmtvatvidkdnftv
ltpnqqtsdlnnagknwhmgtsfhkspwrktdlglipsvtevhsfatidnngfamgyhqg
dvaprevglfyfpdafnspsnyvrrqipseyepdasepcikyydgvlylitrgtrgdrlg
sslhrsrdigqtweslrfphnvhhttlpfakvgddlimfgseraeneweagapddrykas
yprtfyarlnvnnwnaddiewvnitdqiyqggivnsgvgvgsvvvkdnyiyymfggedhf
npwtygdnsakdpfksdghpsdlycykmkigpdnrv

Timeline for d1v0fb1:

• d1v0fb1 first appeared in SCOP 1.71
  
• d1v0fb1 appears in SCOPe 2.07