PDB entry 7by9

View 7by9 on RCSB PDB site
Description: Malate Dehydrogenase from Geobacillus stearothermophilus (gs-MDH) complexed with Oxaloacetic Acid (OAA) and Nicotinamide Adenine Dinucleotide (NAD)
Class: oxidoreductase
Keywords: Malate Dehydrogenase, OXIDOREDUCTASE
Deposited on 2020-04-22, released 2021-03-24
The last revision prior to the SCOPe 2.07 freeze date was dated 2021-03-24, with a file datestamp of 2021-03-19.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: malate dehydrogenase
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Gene: MDH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7by9a1, d7by9a2
  • Chain 'B':
    Compound: malate dehydrogenase
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Gene: MDH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7by9b1, d7by9b2
  • Chain 'C':
    Compound: malate dehydrogenase
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Gene: MDH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7by9c1, d7by9c2
  • Chain 'D':
    Compound: malate dehydrogenase
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Gene: MDH
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7by9d1, d7by9d2
  • Heterogens: NAD, OAA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7by9A (A:)
mgsshhhhhhssglvprgshmamkrkkisvigagftgattafllaqkelgdvvlvdipql
enptkgkaldmleaspvlgfdaniigtsdyadtadsdivvitagiarkpgmsrddlvttn
qkimkqvtkevvkyspncyiivltnpvdamtytvfkesgfpknrvigqsgvldtarfrtf
vaeelnisvkdvtgfvlgghgddmvplvrysyaggipleklipkdrldaivertrkggge
ivnllgngsayyapaaslvemveailkdqrrilpaiaylegeygyegiylgvptilggng
iekvielelteeekaalaksvesvknvmrmle

    Sequence, based on observed residues (ATOM records): (download) 
    >7by9A (A:)
amkrkkisvigagftgattafllaqkelgdvvlvdipqlenptkgkaldmleaspvlgfd
aniigtsdyadtadsdivvitagiarkpgmsrddlvttnqkimkqvtkevvkyspncyii
vltnpvdamtytvfkesgfpknrvigqsgvldtarfrtfvaeelnisvkdvtgfvlgghg
ddmvplvrysyaggipleklipkdrldaivertrkgggeivnllgngsayyapaaslvem
veailkdqrrilpaiaylegeygyegiylgvptilggngiekvielelteeekaalaksv
esvknvmrmle

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7by9B (B:)
mgsshhhhhhssglvprgshmamkrkkisvigagftgattafllaqkelgdvvlvdipql
enptkgkaldmleaspvlgfdaniigtsdyadtadsdivvitagiarkpgmsrddlvttn
qkimkqvtkevvkyspncyiivltnpvdamtytvfkesgfpknrvigqsgvldtarfrtf
vaeelnisvkdvtgfvlgghgddmvplvrysyaggipleklipkdrldaivertrkggge
ivnllgngsayyapaaslvemveailkdqrrilpaiaylegeygyegiylgvptilggng
iekvielelteeekaalaksvesvknvmrmle

    Sequence, based on observed residues (ATOM records): (download) 
    >7by9B (B:)
amkrkkisvigagftgattafllaqkelgdvvlvdipqlenptkgkaldmleaspvlgfd
aniigtsdyadtadsdivvitagigmsrddlvttnqkimkqvtkevvkyspncyiivltn
pvdamtytvfkesgfpknrvigqsgvldtarfrtfvaeelnisvkdvtgfvlgghgddmv
plvrysyaggipleklipkdrldaivertrkgggeivnllgngsayyapaaslvemveai
lkdqrrilpaiaylegeygyegiylgvptilggngiekvielelteeekaalaksvesvk
nvmrmle

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >7by9C (C:)
mgsshhhhhhssglvprgshmamkrkkisvigagftgattafllaqkelgdvvlvdipql
enptkgkaldmleaspvlgfdaniigtsdyadtadsdivvitagiarkpgmsrddlvttn
qkimkqvtkevvkyspncyiivltnpvdamtytvfkesgfpknrvigqsgvldtarfrtf
vaeelnisvkdvtgfvlgghgddmvplvrysyaggipleklipkdrldaivertrkggge
ivnllgngsayyapaaslvemveailkdqrrilpaiaylegeygyegiylgvptilggng
iekvielelteeekaalaksvesvknvmrmle

    Sequence, based on observed residues (ATOM records): (download) 
    >7by9C (C:)
amkrkkisvigagftgattafllaqkelgdvvlvdipqlenptkgkaldmleaspvlgfd
aniigtsdyadtadsdivvitagialvttnqkimkqvtkevvkyspncyiivltnpvdam
tytvfkesgfpknrvigqsgvldtarfrtfvaeelnisvkdvtgfvlgghgddmvplvry
syaggipleklipkdrldaivertrkgggeivnllgngsayyapaaslvemveailkdqr
rilpaiaylegeygyegiylgvptilggngiekvielelteeekaalaksvesvknvmrm
le

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >7by9D (D:)
mgsshhhhhhssglvprgshmamkrkkisvigagftgattafllaqkelgdvvlvdipql
enptkgkaldmleaspvlgfdaniigtsdyadtadsdivvitagiarkpgmsrddlvttn
qkimkqvtkevvkyspncyiivltnpvdamtytvfkesgfpknrvigqsgvldtarfrtf
vaeelnisvkdvtgfvlgghgddmvplvrysyaggipleklipkdrldaivertrkggge
ivnllgngsayyapaaslvemveailkdqrrilpaiaylegeygyegiylgvptilggng
iekvielelteeekaalaksvesvknvmrmle

    Sequence, based on observed residues (ATOM records): (download) 
    >7by9D (D:)
amkrkkisvigagftgattafllaqkelgdvvlvdipqlenptkgkaldmleaspvlgfd
aniigtsdyadtadsdivvitagiarkpgmsrddlvttnqkimkqvtkevvkyspncyii
vltnpvdamtytvfkesgfpknrvigqsgvldtarfrtfvaeelnisvkdvtgfvlgghg
ddmvplvrysyaggipleklipkdrldaivertrkgggeivnllgngsayyapaaslvem
veailkdqrrilpaiaylegeygyegiylgvptilggngiekvielelteeekaalaksv
esvknvmrmle