PDB entry 6j5d

View 6j5d on RCSB PDB site
Description: Complex structure of MAb 4.2-scFv with louping ill virus envelope protein Domain III
Class: viral protein/immune system
Keywords: protective and neutralizing antibody, flavivirus envelope protein, ANTIVIRAL PROTEIN, VIRAL PROTEIN-IMMUNE SYSTEM complex
Deposited on 2019-01-10, released 2019-02-06
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-04-17, with a file datestamp of 2019-04-12.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Envelope
    Species: Louping ill virus [TaxId:11086]
    Gene: ENVELOPE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6j5da_
  • Chain 'H':
    Compound: antibody heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6J5D (0-119)
    Domains in SCOPe 2.08: d6j5dh1, d6j5dh2
  • Chain 'L':
    Compound: Antibody Light Chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6J5D (0-End)
    Domains in SCOPe 2.08: d6j5dl_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6j5dA (A:)
gltytmcdkskfawkrtptdsghdtvvmevtfsgskpcripvravahgspdvnvamlitp
nptiendgggfiemqlppgdniiyvgelshqwfqtgssigr

    Sequence, based on observed residues (ATOM records): (download) 
    >6j5dA (A:)
ytmcdkskfawkrtptdsghdtvvmevtfsgskpcripvravahgspdvnvamlitpnpt
iendgggfiemqlppgdniiyvgelshqwfqtgs

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6j5dH (H:)
qvqlqqsgpelvkpgasvkmsckasgytftdyvigwvkqrtgqglewigeiypgsgttyy
nekfkdkatltadkssntaymqlssltsedsavyfcargedgyyialdywgqgttvtvss

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >6j5dL (L:)
dieltqspaslsasvgetvtitcrasgnihnylawyqqkqgkspqllvykaqtladgvps
rfsgsgsgtqyslkinslqpedfgsyycqhfwstppwtfgggtkleikr

    Sequence, based on observed residues (ATOM records): (download) 
    >6j5dL (L:)
dieltqspaslsasvgetvtitcrasgnihnylawyqqkqgkspqllvykaqtladgvps
rfsgsgsgtqyslkinslqpedfgsyycqhfwstppwtfgggtkleik