PDB entry 5ydb

View 5ydb on RCSB PDB site
Description: Crystal structure of the complex of type II dehydroquinate dehydratase from Acinetobacter baumannii with dehydroquinic acid at 1.76 Angstrom resolution
Class: lyase
Keywords: lyase
Deposited on 2017-09-12, released 2017-09-20
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-09-20, with a file datestamp of 2017-09-15.
Experiment type: XRAY
Resolution: 1.76 Å
R-factor: N/A
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 3-dehydroquinate dehydratase
    Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
    Gene: aroQ, A1S_2009
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5ydba_
  • Chain 'B':
    Compound: 3-dehydroquinate dehydratase
    Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
    Gene: aroQ, A1S_2009
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5ydbb_
  • Chain 'C':
    Compound: 3-dehydroquinate dehydratase
    Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
    Gene: aroQ, A1S_2009
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5ydbc_
  • Chain 'D':
    Compound: 3-dehydroquinate dehydratase
    Species: Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377) [TaxId:400667]
    Gene: aroQ, A1S_2009
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5ydbd_
  • Heterogens: NA, DQA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5ydbA (A:)
stilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdri
hqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdka
igvicglgakgysfaldyaiekiqpsnp

    Sequence, based on observed residues (ATOM records): (download) 
    >5ydbA (A:)
stilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdri
hqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdka
igvicglgakgysfaldyaiekiqp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5ydbB (B:)
stilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdri
hqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdka
igvicglgakgysfaldyaiekiqpsnp

    Sequence, based on observed residues (ATOM records): (download) 
    >5ydbB (B:)
stilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdri
hqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdka
igvicglgakgysfaldyaiekiqp

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5ydbC (C:)
stilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdri
hqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdka
igvicglgakgysfaldyaiekiqpsnp

    Sequence, based on observed residues (ATOM records): (download) 
    >5ydbC (C:)
stilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdri
hqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdka
igvicglgakgysfaldyaiekiqp

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5ydbD (D:)
stilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdri
hqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdka
igvicglgakgysfaldyaiekiqpsnp

    Sequence, based on observed residues (ATOM records): (download) 
    >5ydbD (D:)
stilvihgpnlnllgkrepevyghltldninrqliaqaeqasitldtfqsnwegaivdri
hqaqtegvkliiinpaalthtsvalrdallgvaipfievhlsnvhareafrhhsylsdka
igvicglgakgysfaldyaiekiqp