PDB entry 5ue9
View 5ue9 on RCSB PDB site
Description: WT DHODB with orotate bound
Class: oxidoreductase
Keywords: orotate, pyrimidine biosynthesis, FeS cluster, electron transfer, dehydrogenase, oxidoreductase, protein engineering
Deposited on
2016-12-29, released
2017-09-06
The last revision prior to the SCOPe 2.07 freeze date was dated
2017-09-06, with a file datestamp of
2017-09-01.
Experiment type: XRAY
Resolution: 2.72 Å
R-factor: N/A
AEROSPACI score: 0.17
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: dihydroorotate dehydrogenase
Species: Lactococcus lactis subsp. lactis [TaxId:1360]
Gene: pyrD, NCDO895_2365
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5ue9a_ - Chain 'B':
Compound: Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit
Species: Lactococcus lactis subsp. lactis [TaxId:1360]
Gene: pyrK, NCDO895_2366
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5ue9b1, d5ue9b2 - Chain 'C':
Compound: dihydroorotate dehydrogenase
Species: Lactococcus lactis subsp. lactis [TaxId:1360]
Gene: pyrD, NCDO895_2365
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5ue9c_ - Chain 'D':
Compound: Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit
Species: Lactococcus lactis subsp. lactis [TaxId:1360]
Gene: pyrK, NCDO895_2366
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5ue9d1, d5ue9d2 - Heterogens: FMN, ORO, CL, FAD, FES, GOL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>5ue9A (A:)
nrlsvklpgldlknpiipasgcfgfgeeyakyydlnklgsimvkattlhprfgnptprva
etasgmlnaiglqnpglevimaeklpwlnenfpdlpiianvagseeddyvavcakigdap
nvkvielniscpnvkhggqafgtdpdvaaalvkackavskvplyvklspnvtdivpiaka
veaagadgltmintlmgvrfdlktrkpvlanitgglsgpaikpvalklihqvaqvvdipi
igmggvesaqdvlemymagasavavgtanfadpfvcpkiieklpevmdqygidslenliq
evknsk
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>5ue9B (B:)
mpklqemmtivsqrevasnifemvlkgelveemdlpgqflhlavpnasmllrrpisissw
dkvaktctilyrigdetsgtyeisklqsgakidvmgplgngfpvdevvstdkilivgggi
gvpplyelakqleekncqmtillgfasekvkilekefaelknvslkiatddgsygtkghv
gmlmeeidfevdalytcgapamlkavakkyeqlerlyismesrmacgigacyacvehdke
denhalkvcedgpvflgkqlll
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5ue9C (C:)
nrlsvklpgldlknpiipasgcfgfgeeyakyydlnklgsimvkattlhprfgnptprva
etasgmlnaiglqnpglevimaeklpwlnenfpdlpiianvagseeddyvavcakigdap
nvkvielniscpnvkhggqafgtdpdvaaalvkackavskvplyvklspnvtdivpiaka
veaagadgltmintlmgvrfdlktrkpvlanitgglsgpaikpvalklihqvaqvvdipi
igmggvesaqdvlemymagasavavgtanfadpfvcpkiieklpevmdqygidslenliq
evknsk
Sequence, based on observed residues (ATOM records): (download)
>5ue9C (C:)
nrlsvklpgldlknpiipasgcfgfgeeyakyydlnklgsimvkattlhprfgnptprva
etasgmlnaiglqnpglevimaeklpwlnenfpdlpiianvagseeddyvavcakigdap
nvkvielniscpnvkhggqafgtdpdvaaalvkackavskvplyvklspnvtdivpiaka
veaagadgltmintlmgvrfdlktrkpvlanitgglsgpaikpvalklihqvaqvvdipi
igmggvesaqdvlemymagasavavgtanfadpfvcpkiieklpevmdqygidslenliq
evkns
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>5ue9D (D:)
mpklqemmtivsqrevasnifemvlkgelveemdlpgqflhlavpnasmllrrpisissw
dkvaktctilyrigdetsgtyeisklqsgakidvmgplgngfpvdevvstdkilivgggi
gvpplyelakqleekncqmtillgfasekvkilekefaelknvslkiatddgsygtkghv
gmlmeeidfevdalytcgapamlkavakkyeqlerlyismesrmacgigacyacvehdke
denhalkvcedgpvflgkqlll