PDB entry 5thp

View 5thp on RCSB PDB site
Description: Rhodocetin in complex with the integrin alpha2-A domain
Class: cell adhesion
Keywords: C-type lectin, integrin, venom, coagulation, CELL ADHESION
Deposited on 2016-09-30, released 2017-08-02
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-08-02, with a file datestamp of 2017-07-28.
Experiment type: XRAY
Resolution: 3.01 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Snaclec rhodocetin subunit gamma
    Species: Calloselasma rhodostoma [TaxId:8717]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5thpa_
  • Chain 'B':
    Compound: Snaclec rhodocetin subunit delta
    Species: Calloselasma rhodostoma [TaxId:8717]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5thpb_
  • Chain 'C':
    Compound: Integrin alpha-2
    Species: Homo sapiens [TaxId:9606]
    Gene: ITGA2, CD49B
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5thpc_
  • Chain 'D':
    Compound: Snaclec rhodocetin subunit gamma
    Species: Calloselasma rhodostoma [TaxId:8717]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5thpd_
  • Chain 'E':
    Compound: Snaclec rhodocetin subunit delta
    Species: Calloselasma rhodostoma [TaxId:8717]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5thpe_
  • Chain 'F':
    Compound: Integrin alpha-2
    Species: Homo sapiens [TaxId:9606]
    Gene: ITGA2, CD49B
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5thpf_
  • Chain 'G':
    Compound: Snaclec rhodocetin subunit gamma
    Species: Calloselasma rhodostoma [TaxId:8717]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5thpg_
  • Chain 'H':
    Compound: Snaclec rhodocetin subunit delta
    Species: Calloselasma rhodostoma [TaxId:8717]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5thph_
  • Chain 'I':
    Compound: Integrin alpha-2
    Species: Homo sapiens [TaxId:9606]
    Gene: ITGA2, CD49B
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5thpi_
  • Chain 'J':
    Compound: Snaclec rhodocetin subunit gamma
    Species: Calloselasma rhodostoma [TaxId:8717]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5thpj_
  • Chain 'K':
    Compound: Snaclec rhodocetin subunit delta
    Species: Calloselasma rhodostoma [TaxId:8717]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5thpk_
  • Chain 'L':
    Compound: Integrin alpha-2
    Species: Homo sapiens [TaxId:9606]
    Gene: ITGA2, CD49B
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5thpl_
  • Chain 'M':
    Compound: Snaclec rhodocetin subunit gamma
    Species: Calloselasma rhodostoma [TaxId:8717]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5thpm_
  • Chain 'N':
    Compound: Snaclec rhodocetin subunit delta
    Species: Calloselasma rhodostoma [TaxId:8717]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5thpn_
  • Chain 'O':
    Compound: Integrin alpha-2
    Species: Homo sapiens [TaxId:9606]
    Gene: ITGA2, CD49B
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5thpo_
  • Chain 'P':
    Compound: Snaclec rhodocetin subunit gamma
    Species: Calloselasma rhodostoma [TaxId:8717]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5thpp_
  • Chain 'Q':
    Compound: Snaclec rhodocetin subunit delta
    Species: Calloselasma rhodostoma [TaxId:8717]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5thpq_
  • Chain 'R':
    Compound: Integrin alpha-2
    Species: Homo sapiens [TaxId:9606]
    Gene: ITGA2, CD49B
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5thpr_
  • Heterogens: NA, CL, GOL, MG, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5thpA (A:)
dfnclpgwsaydqhcyqafnepktwdeaerfcteqakrghlvsigsdgeadfvaqlvtnn
ikrpelyvwiglrdrrkeqqcssewsmsasiiyvnwntgesqmcqglarwtgfrkwdysd
cqaknpfvckfpsec

    Sequence, based on observed residues (ATOM records): (download) 
    >5thpA (A:)
fnclpgwsaydqhcyqafnepktwdeaerfcteqakrghlvsigsdgeadfvaqlvtnni
krpelyvwiglrkeqqcssewsmsasiiyvnwntgesqmcqglarwtgfrkwdysdcqak
npfvckfps

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5thpB (B:)
cplhwssyngycyrvfselktwedaesfcyaqhkgsrlasihsreeeafvgklasqtlky
tsmwlglnnpwkeckwewsddakldykvwlrrpycavmvvktdrifwfnrgcektvsfvc
kfys

    Sequence, based on observed residues (ATOM records): (download) 
    >5thpB (B:)
cplhwyngycyrvfselktwedaesfcyaqhkgsrlasihreeeafvgklasqtlkytsm
wlglnnpwkeckwewsddakldykvwlrrpycavmvvktdrifwfnrgcektvsfvckf

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5thpC (C:)
mgsshhhhhhssglvprggspslidvvvvcdesnsiypwdavknflekfvqgldigptkt
qvgliqyannprvvfnlntyktkeemivatsqtsqyggdltntfgaiqyarkyaysaasg
grrsatkvmvvvtdgeshdgsmlkavidqcnhdnilrfgiavlgylnrnaldtknlikei
kaiasipteryffnvsdeaallekagtlgeqifsieg

    Sequence, based on observed residues (ATOM records): (download) 
    >5thpC (C:)
lidvvvvcdesnsiwdavknflekfvqgldigptktqvgliqyannprvvfnlntyktke
emivatsqtsqyggdltntfgaiqyarkyaysaasggrrsatkvmvvvtdgeshdgsmlk
avidqcnhdnilrfgiavlgylnrnaldtknlikeikaiasipteryffnvsdeaallek
agtlgeqifs

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5thpD (D:)
dfnclpgwsaydqhcyqafnepktwdeaerfcteqakrghlvsigsdgeadfvaqlvtnn
ikrpelyvwiglrdrrkeqqcssewsmsasiiyvnwntgesqmcqglarwtgfrkwdysd
cqaknpfvckfpsec

    Sequence, based on observed residues (ATOM records): (download) 
    >5thpD (D:)
fnclpgwsaydqhcyqafnepktwdeaerfcteqaghlvsigsdgeadfvaqlvtnnikr
pelyvwiglrdrrkeqqcssewsmsasiiyvnwntgesqmcqglarwtgfrkwdysdcqa
knpfvckfps

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5thpE (E:)
cplhwssyngycyrvfselktwedaesfcyaqhkgsrlasihsreeeafvgklasqtlky
tsmwlglnnpwkeckwewsddakldykvwlrrpycavmvvktdrifwfnrgcektvsfvc
kfys

    Sequence, based on observed residues (ATOM records): (download) 
    >5thpE (E:)
cplhwssyngycyrvfselktwedaesfcyaqhkgsrlasihsreeeafvgklasqtlky
tsmwlglnnpwkeckwewsddakldykvwlrrpycavmvvktdrifwfnrgcektvsfvc
kf

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5thpF (F:)
mgsshhhhhhssglvprggspslidvvvvcdesnsiypwdavknflekfvqgldigptkt
qvgliqyannprvvfnlntyktkeemivatsqtsqyggdltntfgaiqyarkyaysaasg
grrsatkvmvvvtdgeshdgsmlkavidqcnhdnilrfgiavlgylnrnaldtknlikei
kaiasipteryffnvsdeaallekagtlgeqifsieg

    Sequence, based on observed residues (ATOM records): (download) 
    >5thpF (F:)
lidvvvvcdesnsiypwdavknflekfvqgldigptktqvgliqyannprvvfnlntykt
keemivatsqtsqyggdltntfgaiqyarkyaysaasggrrsatkvmvvvtdgeshdgsm
lkavidqcnhdnilrfgiavlgylnrnaldtknlikeikaiasipteryffnvsdeaall
ekagtlgeqifsi

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >5thpG (G:)
dfnclpgwsaydqhcyqafnepktwdeaerfcteqakrghlvsigsdgeadfvaqlvtnn
ikrpelyvwiglrdrrkeqqcssewsmsasiiyvnwntgesqmcqglarwtgfrkwdysd
cqaknpfvckfpsec

    Sequence, based on observed residues (ATOM records): (download) 
    >5thpG (G:)
fnclpgwsaydqhcyqafnepktwdeaerfcteqakrghlvsigsdgeadfvaqlvtnni
krpelyvwiglrdrrkeqqcssewsmsasiiyvnwntgesqmcqglarwtgfrkwdysdc
qaknpfvckfps

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >5thpH (H:)
cplhwssyngycyrvfselktwedaesfcyaqhkgsrlasihsreeeafvgklasqtlky
tsmwlglnnpwkeckwewsddakldykvwlrrpycavmvvktdrifwfnrgcektvsfvc
kfys

    Sequence, based on observed residues (ATOM records): (download) 
    >5thpH (H:)
cplhwyngycyrvfselktwedaesfcyaqhkgsrlasihsreeeafvgklasqtlkyts
mwlglnnpwkeckwewsddakldykvwlrrpycavmvvktdrifwfnrgcektvsfvckf

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >5thpI (I:)
mgsshhhhhhssglvprggspslidvvvvcdesnsiypwdavknflekfvqgldigptkt
qvgliqyannprvvfnlntyktkeemivatsqtsqyggdltntfgaiqyarkyaysaasg
grrsatkvmvvvtdgeshdgsmlkavidqcnhdnilrfgiavlgylnrnaldtknlikei
kaiasipteryffnvsdeaallekagtlgeqifsieg

    Sequence, based on observed residues (ATOM records): (download) 
    >5thpI (I:)
idvvvvcdesnsiypwdavknflekfvqgldigptktqvgliqyannprvvfnlntyktk
eemivatsqtsqyggdltntfgaiqyarkyaysaasggrrsatkvmvvvtdgeshdgsml
kavidqcnhdnilrfgiavlgylnrnaldtknlikeikaiasipteryffnvsdeaalle
kagtlgeqifs

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >5thpJ (J:)
dfnclpgwsaydqhcyqafnepktwdeaerfcteqakrghlvsigsdgeadfvaqlvtnn
ikrpelyvwiglrdrrkeqqcssewsmsasiiyvnwntgesqmcqglarwtgfrkwdysd
cqaknpfvckfpsec

    Sequence, based on observed residues (ATOM records): (download) 
    >5thpJ (J:)
nclpgwsaydqhcyqafnepktwdeaerfcteqakrghlvsigsdgeadfvaqlvtnnik
rpelyvwiglrdrrkeqqcssewsmsasiiyvnwntgesqmcqglarwtgfrkwdysdcq
aknpfvckfps

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >5thpK (K:)
cplhwssyngycyrvfselktwedaesfcyaqhkgsrlasihsreeeafvgklasqtlky
tsmwlglnnpwkeckwewsddakldykvwlrrpycavmvvktdrifwfnrgcektvsfvc
kfys

    Sequence, based on observed residues (ATOM records): (download) 
    >5thpK (K:)
vfselktwedaesfcyaqhkgsrlasihsreeeafvgklasqtlkytsmwlglnnpwkec
kwewsddakldykvwlrrpycavmvvktdrifwfnrgcektvsfvckf

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >5thpL (L:)
mgsshhhhhhssglvprggspslidvvvvcdesnsiypwdavknflekfvqgldigptkt
qvgliqyannprvvfnlntyktkeemivatsqtsqyggdltntfgaiqyarkyaysaasg
grrsatkvmvvvtdgeshdgsmlkavidqcnhdnilrfgiavlgylnrnaldtknlikei
kaiasipteryffnvsdeaallekagtlgeqifsieg

    Sequence, based on observed residues (ATOM records): (download) 
    >5thpL (L:)
dvvvvcdesnsiypwdavknflekfvqgldigptktqvgliqyannprvvfnlntyktke
emivatsqtsqyggdltntfgaiqyarkyaysaasggrrsatkvmvvvtdgeshdgsmlk
avidqcnhdnilrfgiavlgylnrnaldtknlikeikaiasipteryffnvsdeaallek
agtlgeqif

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >5thpM (M:)
dfnclpgwsaydqhcyqafnepktwdeaerfcteqakrghlvsigsdgeadfvaqlvtnn
ikrpelyvwiglrdrrkeqqcssewsmsasiiyvnwntgesqmcqglarwtgfrkwdysd
cqaknpfvckfpsec

    Sequence, based on observed residues (ATOM records): (download) 
    >5thpM (M:)
fnclpgwsaydqhcyqafnepktwdeaerfcteqakrghlvsigsdgeadfvaqlvtnni
krpelyvwiglrdrrkeqqcssewsmsasiiyvnwntgesqmcqglarwtgfrkwdysdc
qaknpfvckfps

  • Chain 'N':
    Sequence, based on SEQRES records: (download) 
    >5thpN (N:)
cplhwssyngycyrvfselktwedaesfcyaqhkgsrlasihsreeeafvgklasqtlky
tsmwlglnnpwkeckwewsddakldykvwlrrpycavmvvktdrifwfnrgcektvsfvc
kfys

    Sequence, based on observed residues (ATOM records): (download) 
    >5thpN (N:)
cplhwssyngycyrvfselktwedaesfcyaqhkgsrlasihsreeeafvgklasqtlky
tsmwlglnnpwkeckwewsddakldykvwlrrpycavmvvktdrifwfnrgcektvsfvc
kf

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >5thpO (O:)
mgsshhhhhhssglvprggspslidvvvvcdesnsiypwdavknflekfvqgldigptkt
qvgliqyannprvvfnlntyktkeemivatsqtsqyggdltntfgaiqyarkyaysaasg
grrsatkvmvvvtdgeshdgsmlkavidqcnhdnilrfgiavlgylnrnaldtknlikei
kaiasipteryffnvsdeaallekagtlgeqifsieg

    Sequence, based on observed residues (ATOM records): (download) 
    >5thpO (O:)
slidvvvvcdesnsiypwdavknflekfvqgldigptktqvgliqynnprvvfnlntykt
keemivatsqtsqyggdltntfgaiqyarkyaysaasggrrsatkvmvvvtdgeshdgsm
lkavidqcnhdnilrfgiavlgylnrnaldtknlikeikaiasipteryffnvsdeaall
ekagtlgeqif

  • Chain 'P':
    Sequence, based on SEQRES records: (download) 
    >5thpP (P:)
dfnclpgwsaydqhcyqafnepktwdeaerfcteqakrghlvsigsdgeadfvaqlvtnn
ikrpelyvwiglrdrrkeqqcssewsmsasiiyvnwntgesqmcqglarwtgfrkwdysd
cqaknpfvckfpsec

    Sequence, based on observed residues (ATOM records): (download) 
    >5thpP (P:)
fnclpgwsaydqhcyqafnepktwdeaerfcteqakrghlvsigsdgeadfvaqlvtnni
krpelyvwiglrdrrkeqqcssewsmsasiiyvnwntgesqmcqglarwtgfrkwdysdc
qaknpfvckfps

  • Chain 'Q':
    Sequence, based on SEQRES records: (download) 
    >5thpQ (Q:)
cplhwssyngycyrvfselktwedaesfcyaqhkgsrlasihsreeeafvgklasqtlky
tsmwlglnnpwkeckwewsddakldykvwlrrpycavmvvktdrifwfnrgcektvsfvc
kfys

    Sequence, based on observed residues (ATOM records): (download) 
    >5thpQ (Q:)
cplhwssyngycyrvfselktwedaesfcyaqhkgsrlasihsreeeafvgklasqtlky
tsmwlglnnpwkeckwewsddakldykvwlrrpycavmvvktdrifwfnrgcektvsfvc
kf

  • Chain 'R':
    Sequence, based on SEQRES records: (download) 
    >5thpR (R:)
mgsshhhhhhssglvprggspslidvvvvcdesnsiypwdavknflekfvqgldigptkt
qvgliqyannprvvfnlntyktkeemivatsqtsqyggdltntfgaiqyarkyaysaasg
grrsatkvmvvvtdgeshdgsmlkavidqcnhdnilrfgiavlgylnrnaldtknlikei
kaiasipteryffnvsdeaallekagtlgeqifsieg

    Sequence, based on observed residues (ATOM records): (download) 
    >5thpR (R:)
slivvvvcdesnsiypwdavknflekfvqgldptktqvgliqyannprvvfnlntyktke
emivatsqtsqygltntfgaiqyarkyaysaasggrrsatkvmvvvtdgeshdgsmlkav
idqcnhdnilrfgiavlgylnrnaldtknlikeikaiasipteryffnvsdeaallekag
tlgeqif