PDB entry 5thk

View 5thk on RCSB PDB site
Description: Crystal Structure of a Putative Dehydrogenase from Burkholderia cenocepacia with bound NADP
Class: oxidoreductase
Keywords: SSGCID, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, OXIDOREDUCTASE
Deposited on 2016-09-29, released 2016-10-12
The last revision prior to the SCOPe 2.06 freeze date was dated 2016-10-12, with a file datestamp of 2016-10-07.
Experiment type: XRAY
Resolution: 1.4 Å
R-factor: N/A
AEROSPACI score: 0.53 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative Dehydrogenase
    Species: Burkholderia cenocepacia [TaxId:216591]
    Gene: BCAL2694
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5thka_
  • Chain 'B':
    Compound: Putative Dehydrogenase
    Species: Burkholderia cenocepacia [TaxId:216591]
    Gene: BCAL2694
    Database cross-references and differences (RAF-indexed):
    • Uniprot B4E8W7 (10-265)
      • expression tag (9)
    Domains in SCOPe 2.06: d5thkb1, d5thkb2
  • Chain 'C':
    Compound: Putative Dehydrogenase
    Species: Burkholderia cenocepacia [TaxId:216591]
    Gene: BCAL2694
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5thkc_
  • Chain 'D':
    Compound: Putative Dehydrogenase
    Species: Burkholderia cenocepacia [TaxId:216591]
    Gene: BCAL2694
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5thkd_
  • Chain 'E':
    Compound: Putative Dehydrogenase
    Species: Burkholderia cenocepacia [TaxId:216591]
    Gene: BCAL2694
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5thke_
  • Chain 'F':
    Compound: Putative Dehydrogenase
    Species: Burkholderia cenocepacia [TaxId:216591]
    Gene: BCAL2694
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5thkf_
  • Chain 'G':
    Compound: Putative Dehydrogenase
    Species: Burkholderia cenocepacia [TaxId:216591]
    Gene: BCAL2694
    Database cross-references and differences (RAF-indexed):
    • Uniprot B4E8W7 (10-265)
      • expression tag (1-9)
    Domains in SCOPe 2.06: d5thkg1, d5thkg2
  • Chain 'H':
    Compound: Putative Dehydrogenase
    Species: Burkholderia cenocepacia [TaxId:216591]
    Gene: BCAL2694
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5thkh_
  • Heterogens: NAP, MG, 1PE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5thkA (A:)
mahhhhhhmvathtladkvvliaggaknlggliardlaghgakavaihynsaasqaqaee
taaavraagaeaatfqadlttaaaveklfddakqrfgkidiaintvgkvlkkpfteisea
eydemfavnsksafffikeagrhledhgklvtlvtsllgaftpfyaayegskapvehftr
aaskeygargisvtavgpgpmdtpffypaegadavayhktaaalspfsktgltdiedvvp
firhlvtdgwwitgqtilinggyttk

    Sequence, based on observed residues (ATOM records): (download) 
    >5thkA (A:)
thtladkvvliaggaknlggliardlaghgakavaihynsaasqaqaeetaaavraagae
aatfqadlttaaaveklfddakqrfgkidiaintvgkvlkkpfteiseaeydemfavnsk
safffikeagrhledhgklvtlvtsllgaftpfyaayegskapvehftraaskeygargi
svtavgpgpmdtpffypaegadavayhktaaalspfsktgltdiedvvpfirhlvtdgww
itgqtilinggyttk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5thkB (B:)
mahhhhhhmvathtladkvvliaggaknlggliardlaghgakavaihynsaasqaqaee
taaavraagaeaatfqadlttaaaveklfddakqrfgkidiaintvgkvlkkpfteisea
eydemfavnsksafffikeagrhledhgklvtlvtsllgaftpfyaayegskapvehftr
aaskeygargisvtavgpgpmdtpffypaegadavayhktaaalspfsktgltdiedvvp
firhlvtdgwwitgqtilinggyttk

    Sequence, based on observed residues (ATOM records): (download) 
    >5thkB (B:)
vathtladkvvliaggaknlggliardlaghgakavaihynsaasqaqaeetaaavraag
aeaatfqadlttaaaveklfddakqrfgkidiaintvgkvlkkpfteiseaeydemfavn
sksafffikeagrhledhgklvtlvtsllgaftpfyaayegskapvehftraaskeygar
gisvtavgpgpmdtpffypaegadavayhktaaalspfsktgltdiedvvpfirhlvtdg
wwitgqtilinggyttk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5thkC (C:)
mahhhhhhmvathtladkvvliaggaknlggliardlaghgakavaihynsaasqaqaee
taaavraagaeaatfqadlttaaaveklfddakqrfgkidiaintvgkvlkkpfteisea
eydemfavnsksafffikeagrhledhgklvtlvtsllgaftpfyaayegskapvehftr
aaskeygargisvtavgpgpmdtpffypaegadavayhktaaalspfsktgltdiedvvp
firhlvtdgwwitgqtilinggyttk

    Sequence, based on observed residues (ATOM records): (download) 
    >5thkC (C:)
thtladkvvliaggaknlggliardlaghgakavaihynsaasqaqaeetaaavraagae
aatfqadlttaaaveklfddakqrfgkidiaintvgkvlkkpfteiseaeydemfavnsk
safffikeagrhledhgklvtlvtsllgaftpfyaayegskapvehftraaskeygargi
svtavgpgpmdtpffypaegadavayhktaaalspfsktgltdiedvvpfirhlvtdgww
itgqtilinggyttk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5thkD (D:)
mahhhhhhmvathtladkvvliaggaknlggliardlaghgakavaihynsaasqaqaee
taaavraagaeaatfqadlttaaaveklfddakqrfgkidiaintvgkvlkkpfteisea
eydemfavnsksafffikeagrhledhgklvtlvtsllgaftpfyaayegskapvehftr
aaskeygargisvtavgpgpmdtpffypaegadavayhktaaalspfsktgltdiedvvp
firhlvtdgwwitgqtilinggyttk

    Sequence, based on observed residues (ATOM records): (download) 
    >5thkD (D:)
athtladkvvliaggaknlggliardlaghgakavaihynsaasqaqaeetaaavraaga
eaatfqadlttaaaveklfddakqrfgkidiaintvgkvlkkpfteiseaeydemfavns
ksafffikeagrhledhgklvtlvtsllgaftpfyaayegskapvehftraaskeygarg
isvtavgpgpmdtpffypaegadavayhktaaalspfsktgltdiedvvpfirhlvtdgw
witgqtilinggyttk

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5thkE (E:)
mahhhhhhmvathtladkvvliaggaknlggliardlaghgakavaihynsaasqaqaee
taaavraagaeaatfqadlttaaaveklfddakqrfgkidiaintvgkvlkkpfteisea
eydemfavnsksafffikeagrhledhgklvtlvtsllgaftpfyaayegskapvehftr
aaskeygargisvtavgpgpmdtpffypaegadavayhktaaalspfsktgltdiedvvp
firhlvtdgwwitgqtilinggyttk

    Sequence, based on observed residues (ATOM records): (download) 
    >5thkE (E:)
athtladkvvliaggaknlggliardlaghgakavaihynsaasqaqaeetaaavraaga
eaatfqadlttaaaveklfddakqrfgkidiaintvgkvlkkpfteiseaeydemfavns
ksafffikeagrhledhgklvtlvtsllgaftpfyaayegskapvehftraaskeygarg
isvtavgpgpmdtpffypaegadavayhktaaalspfsktgltdiedvvpfirhlvtdgw
witgqtilinggyttk

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5thkF (F:)
mahhhhhhmvathtladkvvliaggaknlggliardlaghgakavaihynsaasqaqaee
taaavraagaeaatfqadlttaaaveklfddakqrfgkidiaintvgkvlkkpfteisea
eydemfavnsksafffikeagrhledhgklvtlvtsllgaftpfyaayegskapvehftr
aaskeygargisvtavgpgpmdtpffypaegadavayhktaaalspfsktgltdiedvvp
firhlvtdgwwitgqtilinggyttk

    Sequence, based on observed residues (ATOM records): (download) 
    >5thkF (F:)
athtladkvvliaggaknlggliardlaghgakavaihynsaasqaqaeetaaavraaga
eaatfqadlttaaaveklfddakqrfgkidiaintvgkvlkkpfteiseaeydemfavns
ksafffikeagrhledhgklvtlvtsllgaftpfyaayegskapvehftraaskeygarg
isvtavgpgpmdtpffypaegadavayhktaaalspfsktgltdiedvvpfirhlvtdgw
witgqtilinggyttk

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >5thkG (G:)
mahhhhhhmvathtladkvvliaggaknlggliardlaghgakavaihynsaasqaqaee
taaavraagaeaatfqadlttaaaveklfddakqrfgkidiaintvgkvlkkpfteisea
eydemfavnsksafffikeagrhledhgklvtlvtsllgaftpfyaayegskapvehftr
aaskeygargisvtavgpgpmdtpffypaegadavayhktaaalspfsktgltdiedvvp
firhlvtdgwwitgqtilinggyttk

    Sequence, based on observed residues (ATOM records): (download) 
    >5thkG (G:)
ahhhhhhmvathtladkvvliaggaknlggliardlaghgakavaihynsaasqaqaeet
aaavraagaeaatfqadlttaaaveklfddakqrfgkidiaintvgkvlkkpfteiseae
ydemfavnsksafffikeagrhledhgklvtlvtsllgaftpfyaayegskapvehftra
askeygargisvtavgpgpmdtpffypaegadavayhktaaalspfsktgltdiedvvpf
irhlvtdgwwitgqtilinggyttk

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >5thkH (H:)
mahhhhhhmvathtladkvvliaggaknlggliardlaghgakavaihynsaasqaqaee
taaavraagaeaatfqadlttaaaveklfddakqrfgkidiaintvgkvlkkpfteisea
eydemfavnsksafffikeagrhledhgklvtlvtsllgaftpfyaayegskapvehftr
aaskeygargisvtavgpgpmdtpffypaegadavayhktaaalspfsktgltdiedvvp
firhlvtdgwwitgqtilinggyttk

    Sequence, based on observed residues (ATOM records): (download) 
    >5thkH (H:)
athtladkvvliaggaknlggliardlaghgakavaihynsaasqaqaeetaaavraaga
eaatfqadlttaaaveklfddakqrfgkidiaintvgkvlkkpfteiseaeydemfavns
ksafffikeagrhledhgklvtlvtsllgaftpfyaayegskapvehftraaskeygarg
isvtavgpgpmdtpffypaegadavayhktaaalspfsktgltdiedvvpfirhlvtdgw
witgqtilinggyttk