PDB entry 5k2z

View 5k2z on RCSB PDB site
Description: PDX1.3-adduct (Arabidopsis)
Class: biosynthetic protein
Keywords: pyridoxal 5'-phosphate, vitamin B6 biosynthesis, ribose 5-phosphate, Biosynthetic protein
Deposited on 2016-05-19, released 2016-10-05
The last revision prior to the SCOPe 2.07 freeze date was dated 2016-10-19, with a file datestamp of 2016-10-14.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pyridoxal 5'-phosphate synthase subunit PDX1.3
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: PDX13, GIP2, PDX1L3, RSR4, At5g01410, T10O8.120
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5k2za_
  • Chain 'B':
    Compound: Pyridoxal 5'-phosphate synthase subunit PDX1.3
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: PDX13, GIP2, PDX1L3, RSR4, At5g01410, T10O8.120
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5k2zb_
  • Chain 'C':
    Compound: Pyridoxal 5'-phosphate synthase subunit PDX1.3
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: PDX13, GIP2, PDX1L3, RSR4, At5g01410, T10O8.120
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5k2zc_
  • Chain 'D':
    Compound: Pyridoxal 5'-phosphate synthase subunit PDX1.3
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: PDX13, GIP2, PDX1L3, RSR4, At5g01410, T10O8.120
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5k2zd_
  • Heterogens: CL, SO4, 6R3, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5k2zA (A:)
megtgvvavygngaiteakkspfsvkvglaqmlrggvimdvvnaeqariaeeagacavma
lervpadiraqggvarmsdpqmikeikqavtipvmakarighfveaqileaigidyides
evltladedhhinkhnfripfvcgcrnlgealrriregaamirtkgeagtgniieavrhv
rsvngdirvlrnmdddevftfakklaapydlvmqtkqlgrlpvvqfaaggvatpadaalm
mqlgcdgvfvgsgifksgdparraraivqavthysdpemlvevscglgeamvginlndek
verfanrsehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5k2zA (A:)
spfsvkvglaqmlrggvimdvvnaeqariaeeagacavmalervpadiraqggvarmsdp
qmikeikqavtipvmakarighfveaqileaigidyidesevltladedhhinkhnfrip
fvcgcrnlgealrriregaamirtkgeagtgniieavrhvrsvngdirvlrnmdddevft
fakklaapydlvmqtkqlgrlpvvqfaaggvatpadaalmmqlgcdgvfvgsgifksgdp
arraraivqavthysdpemlvevscglgeamvginln

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5k2zB (B:)
megtgvvavygngaiteakkspfsvkvglaqmlrggvimdvvnaeqariaeeagacavma
lervpadiraqggvarmsdpqmikeikqavtipvmakarighfveaqileaigidyides
evltladedhhinkhnfripfvcgcrnlgealrriregaamirtkgeagtgniieavrhv
rsvngdirvlrnmdddevftfakklaapydlvmqtkqlgrlpvvqfaaggvatpadaalm
mqlgcdgvfvgsgifksgdparraraivqavthysdpemlvevscglgeamvginlndek
verfanrsehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5k2zB (B:)
kspfsvkvglaqmlrggvimdvvnaeqariaeeagacavmalervpadiraqggvarmsd
pqmikeikqavtipvmakarighfveaqileaigidyidesevltladedhhinkhnfri
pfvcgcrnlgealrriregaamirtkgeagtgniieavrhvrsvngdirvlrnmdddevf
tfakklaapydlvmqtkqlgrlpvvqfaaggvatpadaalmmqlgcdgvfvgsgifksgd
parraraivqavthysdpemlvevscglgeamvginln

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5k2zC (C:)
megtgvvavygngaiteakkspfsvkvglaqmlrggvimdvvnaeqariaeeagacavma
lervpadiraqggvarmsdpqmikeikqavtipvmakarighfveaqileaigidyides
evltladedhhinkhnfripfvcgcrnlgealrriregaamirtkgeagtgniieavrhv
rsvngdirvlrnmdddevftfakklaapydlvmqtkqlgrlpvvqfaaggvatpadaalm
mqlgcdgvfvgsgifksgdparraraivqavthysdpemlvevscglgeamvginlndek
verfanrsehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5k2zC (C:)
pfsvkvglaqmlrggvimdvvnaeqariaeeagacavmalervpadiraqggvarmsdpq
mikeikqavtipvmakarighfveaqileaigidyidesevltladedhhinkhnfripf
vcgcrnlgealrriregaamirtkgeagtgniieavrhvrsvngdirvlrnmdddevftf
akklaapydlvmqtkqlgrlpvvqfaaggvatpadaalmmqlgcdgvfvgsgifksgdpa
rraraivqavthysdpemlvevscglgeamvginln

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5k2zD (D:)
megtgvvavygngaiteakkspfsvkvglaqmlrggvimdvvnaeqariaeeagacavma
lervpadiraqggvarmsdpqmikeikqavtipvmakarighfveaqileaigidyides
evltladedhhinkhnfripfvcgcrnlgealrriregaamirtkgeagtgniieavrhv
rsvngdirvlrnmdddevftfakklaapydlvmqtkqlgrlpvvqfaaggvatpadaalm
mqlgcdgvfvgsgifksgdparraraivqavthysdpemlvevscglgeamvginlndek
verfanrsehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5k2zD (D:)
kspfsvkvglaqmlrggvimdvvnaeqariaeeagacavmalervpadiraqggvarmsd
pqmikeikqavtipvmakarighfveaqileaigidyidesevltladedhhinkhnfri
pfvcgcrnlgealrriregaamirtkgeagtgniieavrhvrsvngdirvlrnmdddevf
tfakklaapydlvmqtkqlgrlpvvqfaaggvatpadaalmmqlgcdgvfvgsgifksgd
parraraivqavthysdpemlvevscglgeamvginln