PDB entry 5jd3

View 5jd3 on RCSB PDB site
Description: Crystal structure of LAE5, an alpha/beta hydrolase enzyme from the metagenome of Lake Arreo, Spain
Class: hydrolase
Keywords: alpha/beta hydrolase, esterase, metagenome, HYDROLASE
Deposited on 2016-04-15, released 2016-05-04
The last revision prior to the SCOPe 2.07 freeze date was dated 2016-05-04, with a file datestamp of 2016-04-29.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: lae5
    Species: Uncultured bacterium [TaxId:77133]
    Database cross-references and differences (RAF-indexed):
    • PDB 5JD3 (Start-237)
    Domains in SCOPe 2.07: d5jd3a1, d5jd3a2
  • Chain 'B':
    Compound: lae5
    Species: Uncultured bacterium [TaxId:77133]
    Database cross-references and differences (RAF-indexed):
    • PDB 5JD3 (Start-237)
    Domains in SCOPe 2.07: d5jd3b1, d5jd3b2
  • Chain 'C':
    Compound: lae5
    Species: Uncultured bacterium [TaxId:77133]
    Database cross-references and differences (RAF-indexed):
    • PDB 5JD3 (Start-237)
    Domains in SCOPe 2.07: d5jd3c1, d5jd3c2
  • Chain 'D':
    Compound: lae5
    Species: Uncultured bacterium [TaxId:77133]
    Database cross-references and differences (RAF-indexed):
    • PDB 5JD3 (Start-237)
    Domains in SCOPe 2.07: d5jd3d1, d5jd3d2
  • Chain 'E':
    Compound: lae5
    Species: Uncultured bacterium [TaxId:77133]
    Database cross-references and differences (RAF-indexed):
    • PDB 5JD3 (Start-237)
    Domains in SCOPe 2.07: d5jd3e1, d5jd3e2
  • Chain 'F':
    Compound: lae5
    Species: Uncultured bacterium [TaxId:77133]
    Database cross-references and differences (RAF-indexed):
    • PDB 5JD3 (Start-237)
    Domains in SCOPe 2.07: d5jd3f1, d5jd3f2
  • Chain 'G':
    Compound: lae5
    Species: Uncultured bacterium [TaxId:77133]
    Database cross-references and differences (RAF-indexed):
    • PDB 5JD3 (Start-237)
    Domains in SCOPe 2.07: d5jd3g_
  • Chain 'H':
    Compound: lae5
    Species: Uncultured bacterium [TaxId:77133]
    Database cross-references and differences (RAF-indexed):
    • PDB 5JD3 (Start-237)
    Domains in SCOPe 2.07: d5jd3h1, d5jd3h2
  • Heterogens: CL, PEG, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5jd3A (A:)
mgsshhhhhhssgrenlyfqgmyfaagsklviigdsitdagrdkgiggeglfnahgsgyv
allnahlfarfperrlrlvnqgnsgntvrdlaarwqndvfglkpdyvammigindvwrqf
dlplmtdrhvcpeeyektldelvartaptvkgmilltpyfiepnredamrarmdvygdlm
rrvaerhgcllvdvqgafdrylqhyhpaqlawdrihpnlaghqvianaflaatgclns

    Sequence, based on observed residues (ATOM records): (download) 
    >5jd3A (A:)
gmyfaagsklviigdsitdagrdkgiggeglfnahgsgyvallnahlfarfperrlrlvn
qgnsgntvrdlaarwqndvfglkpdyvammigindvwrqfdlplmtdrhvcpeeyektld
elvartaptvkgmilltpyfiepnredamrarmdvygdlmrrvaerhgcllvdvqgafdr
ylqhyhpaqlawdrihpnlaghqvianaflaatgclns

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5jd3B (B:)
mgsshhhhhhssgrenlyfqgmyfaagsklviigdsitdagrdkgiggeglfnahgsgyv
allnahlfarfperrlrlvnqgnsgntvrdlaarwqndvfglkpdyvammigindvwrqf
dlplmtdrhvcpeeyektldelvartaptvkgmilltpyfiepnredamrarmdvygdlm
rrvaerhgcllvdvqgafdrylqhyhpaqlawdrihpnlaghqvianaflaatgclns

    Sequence, based on observed residues (ATOM records): (download) 
    >5jd3B (B:)
gmyfaagsklviigdsitdagrdkgiggeglfnahgsgyvallnahlfarfperrlrlvn
qgnsgntvrdlaarwqndvfglkpdyvammigindvwrqfdlplmtdrhvcpeeyektld
elvartaptvkgmilltpyfiepnredamrarmdvygdlmrrvaerhgcllvdvqgafdr
ylqhyhpaqlawdrihpnlaghqvianaflaatgclns

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5jd3C (C:)
mgsshhhhhhssgrenlyfqgmyfaagsklviigdsitdagrdkgiggeglfnahgsgyv
allnahlfarfperrlrlvnqgnsgntvrdlaarwqndvfglkpdyvammigindvwrqf
dlplmtdrhvcpeeyektldelvartaptvkgmilltpyfiepnredamrarmdvygdlm
rrvaerhgcllvdvqgafdrylqhyhpaqlawdrihpnlaghqvianaflaatgclns

    Sequence, based on observed residues (ATOM records): (download) 
    >5jd3C (C:)
gmyfaagsklviigdsitdagrdkgiggeglfnahgsgyvallnahlfarfperrlrlvn
qgnsgntvrdlaarwqndvfglkpdyvammigindvwrqfdlplmtdrhvcpeeyektld
elvartaptvkgmilltpyfiepnredamrarmdvygdlmrrvaerhgcllvdvqgafdr
ylqhyhpaqlawdrihpnlaghqvianaflaatgclns

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5jd3D (D:)
mgsshhhhhhssgrenlyfqgmyfaagsklviigdsitdagrdkgiggeglfnahgsgyv
allnahlfarfperrlrlvnqgnsgntvrdlaarwqndvfglkpdyvammigindvwrqf
dlplmtdrhvcpeeyektldelvartaptvkgmilltpyfiepnredamrarmdvygdlm
rrvaerhgcllvdvqgafdrylqhyhpaqlawdrihpnlaghqvianaflaatgclns

    Sequence, based on observed residues (ATOM records): (download) 
    >5jd3D (D:)
gmyfaagsklviigdsitdagrdkgiggeglfnahgsgyvallnahlfarfperrlrlvn
qgnsgntvrdlaarwqndvfglkpdyvammigindvwrqfdlplmtdrhvcpeeyektld
elvartaptvkgmilltpyfiepnredamrarmdvygdlmrrvaerhgcllvdvqgafdr
ylqhyhpaqlawdrihpnlaghqvianaflaatgclns

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5jd3E (E:)
mgsshhhhhhssgrenlyfqgmyfaagsklviigdsitdagrdkgiggeglfnahgsgyv
allnahlfarfperrlrlvnqgnsgntvrdlaarwqndvfglkpdyvammigindvwrqf
dlplmtdrhvcpeeyektldelvartaptvkgmilltpyfiepnredamrarmdvygdlm
rrvaerhgcllvdvqgafdrylqhyhpaqlawdrihpnlaghqvianaflaatgclns

    Sequence, based on observed residues (ATOM records): (download) 
    >5jd3E (E:)
gmyfaagsklviigdsitdagrdkgiggeglfnahgsgyvallnahlfarfperrlrlvn
qgnsgntvrdlaarwqndvfglkpdyvammigindvwrqfdlplmtdrhvcpeeyektld
elvartaptvkgmilltpyfiepnredamrarmdvygdlmrrvaerhgcllvdvqgafdr
ylqhyhpaqlawdrihpnlaghqvianaflaatgclns

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5jd3F (F:)
mgsshhhhhhssgrenlyfqgmyfaagsklviigdsitdagrdkgiggeglfnahgsgyv
allnahlfarfperrlrlvnqgnsgntvrdlaarwqndvfglkpdyvammigindvwrqf
dlplmtdrhvcpeeyektldelvartaptvkgmilltpyfiepnredamrarmdvygdlm
rrvaerhgcllvdvqgafdrylqhyhpaqlawdrihpnlaghqvianaflaatgclns

    Sequence, based on observed residues (ATOM records): (download) 
    >5jd3F (F:)
gmyfaagsklviigdsitdagrdkgiggeglfnahgsgyvallnahlfarfperrlrlvn
qgnsgntvrdlaarwqndvfglkpdyvammigindvwrqfdlplmtdrhvcpeeyektld
elvartaptvkgmilltpyfiepnredamrarmdvygdlmrrvaerhgcllvdvqgafdr
ylqhyhpaqlawdrihpnlaghqvianaflaatgclns

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >5jd3G (G:)
mgsshhhhhhssgrenlyfqgmyfaagsklviigdsitdagrdkgiggeglfnahgsgyv
allnahlfarfperrlrlvnqgnsgntvrdlaarwqndvfglkpdyvammigindvwrqf
dlplmtdrhvcpeeyektldelvartaptvkgmilltpyfiepnredamrarmdvygdlm
rrvaerhgcllvdvqgafdrylqhyhpaqlawdrihpnlaghqvianaflaatgclns

    Sequence, based on observed residues (ATOM records): (download) 
    >5jd3G (G:)
myfaagsklviigdsitdagrdkgiggeglfnahgsgyvallnahlfarfperrlrlvnq
gnsgntvrdlaarwqndvfglkpdyvammigindvwrqfdlplmtdrhvcpeeyektlde
lvartaptvkgmilltpyfiepnredamrarmdvygdlmrrvaerhgcllvdvqgafdry
lqhyhpaqlawdrihpnlaghqvianaflaatgclns

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >5jd3H (H:)
mgsshhhhhhssgrenlyfqgmyfaagsklviigdsitdagrdkgiggeglfnahgsgyv
allnahlfarfperrlrlvnqgnsgntvrdlaarwqndvfglkpdyvammigindvwrqf
dlplmtdrhvcpeeyektldelvartaptvkgmilltpyfiepnredamrarmdvygdlm
rrvaerhgcllvdvqgafdrylqhyhpaqlawdrihpnlaghqvianaflaatgclns

    Sequence, based on observed residues (ATOM records): (download) 
    >5jd3H (H:)
gmyfaagsklviigdsitdagrdkgiggeglfnahgsgyvallnahlfarfperrlrlvn
qgnsgntvrdlaarwqndvfglkpdyvammigindvwrqfdlplmtdrhvcpeeyektld
elvartaptvkgmilltpyfiepnredamrarmdvygdlmrrvaerhgcllvdvqgafdr
ylqhyhpaqlawdrihpnlaghqvianaflaatgclns