PDB entry 5jbs

View 5jbs on RCSB PDB site
Description: Conformational changes during monomer-to-dimer transition of Brucella suis VirB8
Class: transport protein
Keywords: M012R-VirB8, TRANSPORT PROTEIN
Deposited on 2016-04-13, released 2017-03-01
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-09-20, with a file datestamp of 2017-09-15.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: type IV secretion system protein virb8
    Species: Brucella suis biovar 1 (strain 1330) [TaxId:204722]
    Gene: virB8, BRA0062, BS1330_II0062
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7CEG3 (0-141)
      • engineered mutation (5)
    Domains in SCOPe 2.07: d5jbsa_
  • Chain 'B':
    Compound: type IV secretion system protein virb8
    Species: Brucella suis biovar 1 (strain 1330) [TaxId:204722]
    Gene: virB8, BRA0062, BS1330_II0062
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7CEG3 (0-End)
      • engineered mutation (5)
    Domains in SCOPe 2.07: d5jbsb_
  • Chain 'C':
    Compound: type IV secretion system protein virb8
    Species: Brucella suis biovar 1 (strain 1330) [TaxId:204722]
    Gene: virB8, BRA0062, BS1330_II0062
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7CEG3 (0-End)
      • engineered mutation (5)
    Domains in SCOPe 2.07: d5jbsc_
  • Chain 'D':
    Compound: type IV secretion system protein virb8
    Species: Brucella suis biovar 1 (strain 1330) [TaxId:204722]
    Gene: virB8, BRA0062, BS1330_II0062
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7CEG3 (0-End)
      • engineered mutation (5)
    Domains in SCOPe 2.07: d5jbsd_
  • Heterogens: CL, GOL, PEG, EPE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5jbsA (A:)
sydtvrdkywlsqyviaretydwytlqkdyetvgmlsspsegqsyasqfqgdkaldkqyg
snvrtsvtivsivpngkgigtvrfakttkrtnetgdgetthwiatigyqyvnpslmsesa
rltnplgfnvtsyrvdpemgvv

    Sequence, based on observed residues (ATOM records): (download) 
    >5jbsA (A:)
sydtvrdkywlsqyviaretydwytlqkdyetvgmlsspsegqsyasqfqgdkaldkqyg
snvrtsvtivsivpngkgigtvrfakttkrtgdgetthwiatigyqyvnpslmsesarlt
nplgfnvtsyrvdpemgvv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5jbsB (B:)
sydtvrdkywlsqyviaretydwytlqkdyetvgmlsspsegqsyasqfqgdkaldkqyg
snvrtsvtivsivpngkgigtvrfakttkrtnetgdgetthwiatigyqyvnpslmsesa
rltnplgfnvtsyrvdpemgvv

    Sequence, based on observed residues (ATOM records): (download) 
    >5jbsB (B:)
sydtvrdkywlsqyviaretydwytlqkdyetvgmlsspsegqsyasqfnvrtsvtivsi
vpngkgigtvrfakttkrtnetgdgetthwiatigyqyvnpslmsesarltnplgfnvts
yrvdpe

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5jbsC (C:)
sydtvrdkywlsqyviaretydwytlqkdyetvgmlsspsegqsyasqfqgdkaldkqyg
snvrtsvtivsivpngkgigtvrfakttkrtnetgdgetthwiatigyqyvnpslmsesa
rltnplgfnvtsyrvdpemgvv

    Sequence, based on observed residues (ATOM records): (download) 
    >5jbsC (C:)
sydtvrdkywlsqyviaretydwytlqkdyetvgmlsspsegqsyasqfqvrtsvtivsi
vpngkgigtvrfakttkgdgetthwiatigyqyvnpslmsesarltnplgfnvtsyrvdp
e

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5jbsD (D:)
sydtvrdkywlsqyviaretydwytlqkdyetvgmlsspsegqsyasqfqgdkaldkqyg
snvrtsvtivsivpngkgigtvrfakttkrtnetgdgetthwiatigyqyvnpslmsesa
rltnplgfnvtsyrvdpemgvv

    Sequence, based on observed residues (ATOM records): (download) 
    >5jbsD (D:)
sydtvrdkywlsqyviaretydwytlqkdyetvgmlsspsegqsyasqfqldkqygsnvr
tsvtivsivpngkgigtvrfakttkrtnetgdgetthwiatigyqyvnpslmsesarltn
plgfnvtsyrvdpemg