PDB entry 5fka
View 5fka on RCSB PDB site
Description: Crystal structure of staphylococcal enterotoxin E in complex with a T cell receptor
Class: immune system
Keywords: immune system, superantigen, staphylcococcal enterotoxin, t cell receptor, major histocompatibility complex
Deposited on
2015-10-15, released
2016-05-25
The last revision prior to the SCOPe 2.07 freeze date was dated
2016-06-01, with a file datestamp of
2016-05-27.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.22
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: T cell receptor alpha chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5fkaa1, d5fkaa2 - Chain 'B':
Compound: T cell receptor beta chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5fkab1, d5fkab2 - Chain 'C':
Compound: staphylococcal enterotoxin e
Species: Staphylococcus aureus [TaxId:1280]
Gene: entA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5fkac1, d5fkac2 - Heterogens: ZN, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5fkaA (A:)
mgiqveqsppdlilqeganstlrcnfsdsvnnlqwfhqnpwgqlinlfyipsgtkqngrl
sattvaterysllyisssqttdsgvyfcavdsatsgtykyifgtgtrlkvlaniqnpdpa
vyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnk
sdfacanafnnsiipedtffpspess
Sequence, based on observed residues (ATOM records): (download)
>5fkaA (A:)
giqveqsppdlilqeganstlrcnfsdsvnnlqwfhqngqlinlfyipsgtkqngrlsat
tvaterysllyisssqttdsgvyfcavdsagtykyifgtgtrlkvlaniqnpdpavyqlr
dskdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnksdfacan
afnnsiipedtffpspe
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5fkaB (B:)
mdtgvsqnprhkitkrgqnvtfrcdpisehnrlywyrqtlgqgpefltyfqneaqleksr
llsdrfsaerpkgsfstleiqrteqgdsamylcasslggyeqyfgpgtrltvtedlknvf
ppevavfvpseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeqp
alndsryalssrlrvsatfwqdprnhfrcqvqfyglsendewtqdrakpvtqivsaeawg
rad
Sequence, based on observed residues (ATOM records): (download)
>5fkaB (B:)
tgvsqnprhkitkrgqnvtfrcdpisehnrlywyrqtlgqgpefltyfqneaqleksrll
sdrfsaerpkgsfstleiqrteqgdsamylcasslggyeqyfgpgtrltvtedlknvfpp
evavfvpseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeqpal
ndsryalssrlrvsatfwqdprnhfrcqvqfyglsendewtqdrakpvtqivsaeawgra
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5fkaC (C:)
sekseeinekdlrkkselqrnalsnlrqiyyynekaitenkesddqflentllfkgfftg
hpwyndllvdlgskdatnkykgkkvdlygayygyqcaggtpnktacmyggvtlhdnnrlt
eekkvpinlwidgkqttvpidkvktskkevtvqeldlqarhylhgkfglynsdsfggkvq
rglivfhssegstvsydlfdaqgqypdtllriyrdnktinsenlhidlylytt
Sequence, based on observed residues (ATOM records): (download)
>5fkaC (C:)
kdlrkkselqrnalsnlrqiyyynekaitenkesddqflentllfkgfftghpwyndllv
dlgskdatnkykgkkvdlygayygyqcagnktacmyggvtlhdnnrlteekkvpinlwid
gkqttvpidkvktskkevtvqeldlqarhylhgkfglynsdsfggkvqrglivfhssegs
tvsydlfdaqgqypdtllriyrdnktinsenlhidlylytt