PDB entry 5dz2

View 5dz2 on RCSB PDB site
Description: Geosmin synthase from Streptomyces coelicolor N-terminal domain complexed with three Mg2+ ions and alendronic acid
Class: lyase
Keywords: terpene, cyclase, geosmin, germacradienol, LYASE
Deposited on 2015-09-25, released 2015-12-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-12-25, with a file datestamp of 2019-12-20.
Experiment type: XRAY
Resolution: 2.11 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Germacradienol/geosmin synthase
    Species: Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) [TaxId:100226]
    Gene: cyc2, SCO6073, SC9B1.20
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5dz2a_
  • Chain 'B':
    Compound: Germacradienol/geosmin synthase
    Species: Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) [TaxId:100226]
    Gene: cyc2, SCO6073, SC9B1.20
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5dz2b_
  • Heterogens: MG, 212, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5dz2A (A:)
mtqqpfqlphfylphparlnphldearahsttwaremgmlegsgvweqsdleahdygllc
aythpdcdgpalslitdwyvwvfffddhflekykrsqdrlagkahldrlplfmplddaag
mpeprnpveagladlwtrtvpamsadwrrrfavatehllnesmwelsninegrvanpvey
iemrrkvggapwsaglveyataevpaavagtrplrvlmetfsdavhlrndlfsyqreved
egelsngvlvletffgcttqeaadlvndvltsrlhqfehtaftevpavalekgltpleva
avgaytkglqdwqsgghewhmrssrymnkgerplagwq

    Sequence, based on observed residues (ATOM records): (download) 
    >5dz2A (A:)
qpfqlphfylphparlnphldearahsttwaremgmlegsgvweqsdleahdygllcayt
hpdcdgpalslitdwyvwvfffddhflekykrsqdrlagkahldrlplfmplgmpeprnp
veagladlwtrtvpamsadwrrrfavatehllnesmwelsninegrvanpveyiemrrkv
ggapwsaglveyataevpaavagtrplrvlmetfsdavhlrndlfsyqrevedegelsng
vlvletffgcttqeaadlvndvltsrlhqfehtaftevpavalekgltplevaavgaytk
glqdwqsgghewhmrssrymnk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5dz2B (B:)
mtqqpfqlphfylphparlnphldearahsttwaremgmlegsgvweqsdleahdygllc
aythpdcdgpalslitdwyvwvfffddhflekykrsqdrlagkahldrlplfmplddaag
mpeprnpveagladlwtrtvpamsadwrrrfavatehllnesmwelsninegrvanpvey
iemrrkvggapwsaglveyataevpaavagtrplrvlmetfsdavhlrndlfsyqreved
egelsngvlvletffgcttqeaadlvndvltsrlhqfehtaftevpavalekgltpleva
avgaytkglqdwqsgghewhmrssrymnkgerplagwq

    Sequence, based on observed residues (ATOM records): (download) 
    >5dz2B (B:)
qpfqlphfylphparlnphldearahsttwaremgmlegsgvweqsdleahdygllcayt
hpdcdgpalslitdwyvwvfffddhflekykrsqdrlagkahldrlplfmplgmpeprnp
veagladlwtrtvpamsadwrrrfavatehllnesmwelsninegrvanpveyiemrrkv
ggapwsaglveyataevpaavagtrplrvlmetfsdavhlrndlfsyqrevedegelsng
vlvletffgcttqeaadlvndvltsrlhqfehtaftevpavalekgltplevaavgaytk
glqdwqsgghewhmrssrymnk