PDB entry 5dii

View 5dii on RCSB PDB site
Description: Structure of an engineered bacterial microcompartment shell protein binding a [4Fe-4S] cluster
Class: structural protein
Keywords: Engineered Protein, Bacterial Microcompartments, STRUCTURAL PROTEIN
Deposited on 2015-09-01, released 2016-02-03
The last revision prior to the SCOPe 2.07 freeze date was dated 2016-05-11, with a file datestamp of 2016-05-06.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Microcompartments protein
    Species: Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) [TaxId:502025]
    Gene: Hoch_5812
    Database cross-references and differences (RAF-indexed):
    • Uniprot D0LHE3 (Start-204)
      • engineered mutation (54)
  • Chain 'B':
    Compound: Microcompartments protein
    Species: Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) [TaxId:502025]
    Gene: Hoch_5812
    Database cross-references and differences (RAF-indexed):
    • Uniprot D0LHE3 (Start-204)
      • engineered mutation (54)
    Domains in SCOPe 2.07: d5diib1, d5diib2
  • Chain 'C':
    Compound: Microcompartments protein
    Species: Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) [TaxId:502025]
    Gene: Hoch_5812
    Database cross-references and differences (RAF-indexed):
    • Uniprot D0LHE3 (0-204)
      • engineered mutation (54)
  • Chain 'D':
    Compound: Microcompartments protein
    Species: Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) [TaxId:502025]
    Gene: Hoch_5812
    Database cross-references and differences (RAF-indexed):
    • Uniprot D0LHE3 (Start-204)
      • engineered mutation (54)
  • Chain 'E':
    Compound: Microcompartments protein
    Species: Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) [TaxId:502025]
    Gene: Hoch_5812
    Database cross-references and differences (RAF-indexed):
    • Uniprot D0LHE3 (Start-204)
      • engineered mutation (54)
    Domains in SCOPe 2.07: d5diie1, d5diie2
  • Chain 'F':
    Compound: Microcompartments protein
    Species: Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) [TaxId:502025]
    Gene: Hoch_5812
    Database cross-references and differences (RAF-indexed):
    • Uniprot D0LHE3 (Start-204)
      • engineered mutation (54)
  • Heterogens: SF4, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5diiB (B:)
mdhaperfdatppagepdrpalgvleltsiargitvadaalkrapslllmsrpvcsgkhl
lmmrgqvaeveesmiaareiagagsgalldelelpyaheqlwrfldapvvadaweedtes
viivetatvcaaidsadaalktapvvlrdmrlaigiagkafftltgeladveaaaevvre
rcgarllelaciarpvdelrgrlff

    Sequence, based on observed residues (ATOM records): (download) 
    >5diiB (B:)
erfdatppagepdrpalgvleltsiargitvadaalkrapslllmsrpvcsgkhllmmrg
qvaeveesmiaareiagagsgalldelelpyaheqlwrfldapvvadawesviivetatv
caaidsadaalktapvvlrdmrlaigiagkafftltgeladveaaaevvrercgarllel
aciarpvdelrgrlff

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5diiE (E:)
mdhaperfdatppagepdrpalgvleltsiargitvadaalkrapslllmsrpvcsgkhl
lmmrgqvaeveesmiaareiagagsgalldelelpyaheqlwrfldapvvadaweedtes
viivetatvcaaidsadaalktapvvlrdmrlaigiagkafftltgeladveaaaevvre
rcgarllelaciarpvdelrgrlff

    Sequence, based on observed residues (ATOM records): (download) 
    >5diiE (E:)
rfdatppagepdrpalgvleltsiargitvadaalkrapslllmsrpvcsgkhllmmrgq
vaeveesmiaareiagagsgalldelelpyaheqlwrfldapvvadawesviivetatvc
aaidsadaalktapvvlrdmrlaigiagkafftltgeladveaaaevvrercgarllela
ciarpvdelrgrlff

  • Chain 'F':
    No sequence available.