PDB entry 5d5g

View 5d5g on RCSB PDB site
Description: Structure of colocasia esculenta agglutinin
Class: sugar binding protein
Keywords: carbohydrate binding, lectin, agglutinin, beta prism II, sugar binding protein
Deposited on 2015-08-10, released 2015-09-02
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-08-30, with a file datestamp of 2017-08-25.
Experiment type: XRAY
Resolution: 1.74 Å
R-factor: N/A
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Tuber agglutinin
    Species: Colocasia esculenta [TaxId:4460]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5d5ga_
  • Chain 'B':
    Compound: Tuber agglutinin
    Species: Colocasia esculenta [TaxId:4460]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5d5gb_
  • Chain 'C':
    Compound: Tuber agglutinin
    Species: Colocasia esculenta [TaxId:4460]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5d5gc_
  • Chain 'D':
    Compound: Tuber agglutinin
    Species: Colocasia esculenta [TaxId:4460]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5d5gd_
  • Heterogens: MG, EPE, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5d5gA (A:)
lgtnyllsgqtldreghlkngdfdlvmqddcnlvlyngnwqsntankgrdckltltdyge
lvikngdgstvwrsraqsvkgnyaavvhpdgrlvvfgpsvfkidpwvpg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5d5gB (B:)
nipftnnllfsgqvlygdgrltakshqlvmqgdcnlvlyggkygwqsnthgngehcflrl
nhkgeliikdddfktiwsssssskhgdyvlilrddgfaviygpaiwetspq

    Sequence, based on observed residues (ATOM records): (download) 
    >5d5gB (B:)
nipftnnllfsgqvlygdgrltakshqlvmqgdcnlvlyggkygwqsnthgngehcflrl
nhkgeliikdddfktiwsssssskhgdyvlilrddgfaviygpaiwetsp

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5d5gC (C:)
lgtnyllsgqtldreghlkngdfdlvmqddcnlvlyngnwqsntankgrdckltltdyge
lvikngdgstvwrsraqsvkgnyaavvhpdgrlvvfgpsvfkidpwvpg

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5d5gD (D:)
nipftnnllfsgqvlygdgrltakshqlvmqgdcnlvlyggkygwqsnthgngehcflrl
nhkgeliikdddfktiwsssssskhgdyvlilrddgfaviygpaiwetspq