PDB entry 5bq3

View 5bq3 on RCSB PDB site
Description: Crystal structure of a sugar ABC transporter (ACTODO_00688) from Actinomyces odontolyticus ATCC 17982 at 2.60 A resolution
Class: transport protein
Keywords: ABC transporter, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, TRANSPORT PROTEIN
Deposited on 2015-05-28, released 2015-08-05
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-10-11, with a file datestamp of 2017-10-06.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Rhamnose ABC transporter, rhamnose-binding protein
    Species: Actinomyces odontolyticus ATCC 17982 [TaxId:411466]
    Gene: rhaS, ACTODO_00688
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5bq3a_
  • Chain 'B':
    Compound: Rhamnose ABC transporter, rhamnose-binding protein
    Species: Actinomyces odontolyticus ATCC 17982 [TaxId:411466]
    Gene: rhaS, ACTODO_00688
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5bq3b_
  • Chain 'C':
    Compound: Rhamnose ABC transporter, rhamnose-binding protein
    Species: Actinomyces odontolyticus ATCC 17982 [TaxId:411466]
    Gene: rhaS, ACTODO_00688
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5bq3c_
  • Chain 'D':
    Compound: Rhamnose ABC transporter, rhamnose-binding protein
    Species: Actinomyces odontolyticus ATCC 17982 [TaxId:411466]
    Gene: rhaS, ACTODO_00688
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5bq3d_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5bq3A (A:)
gcgggtstqgsesssggdasgsydvssqsitfipkqlnnpfsdvmlgggknaageigfae
vnvvgpleassssqvsfinsevqagtnvlviaandpdavcpalqdarkagtkvvtfdsds
aadcrdlfinqveskqvaitmldmvsdqiggsgkvailsatanaanqnawikfmedeias
ndkykgieivakvygddddtksfqeaqgllqahpdlnaivspttvgiaatarylstsdyk
gkvfltglglpnemrsfvkdgtvkefalwdpaqlgyvaayagaaldsgaikgevgekfta
gnlgertigenktvvvgdpvrfnadnidkydf

    Sequence, based on observed residues (ATOM records): (download) 
    >5bq3A (A:)
sgsydvssqsitfipkqlnnpfsdvmlgggknaageigfaevnvvgpleassssqvsfin
sevqagtnvlviaandpdavcpalqdarkagtkvvtfdsdsaadcrdlfinqveskqvai
tmldmvsdqiggsgkvailsatanaanqnawikfmedeiasndkykgieivakvygdddd
tksfqeaqgllqahpdlnaivspttvgiaatarylstsdykgkvfltglglpnemrsfvk
dgtvkefalwdpaqlgyvaayagaaldsgaikgevgekftagnlgertigenktvvvgdp
vrfnadnidkydf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5bq3B (B:)
gcgggtstqgsesssggdasgsydvssqsitfipkqlnnpfsdvmlgggknaageigfae
vnvvgpleassssqvsfinsevqagtnvlviaandpdavcpalqdarkagtkvvtfdsds
aadcrdlfinqveskqvaitmldmvsdqiggsgkvailsatanaanqnawikfmedeias
ndkykgieivakvygddddtksfqeaqgllqahpdlnaivspttvgiaatarylstsdyk
gkvfltglglpnemrsfvkdgtvkefalwdpaqlgyvaayagaaldsgaikgevgekfta
gnlgertigenktvvvgdpvrfnadnidkydf

    Sequence, based on observed residues (ATOM records): (download) 
    >5bq3B (B:)
sgsydvssqsitfipkqlnnpfsdvmlgggknaageigfaevnvvgpleassssqvsfin
sevqagtnvlviaandpdavcpalqdarkagtkvvtfdsdsaadcrdlfinqveskqvai
tmldmvsdqiggsgkvailsatanaanqnawikfmedeiasndkykgieivakvygdddd
tksfqeaqgllqahpdlnaivspttvgiaatarylstsdykgkvfltglglpnemrsfvk
dgtvkefalwdpaqlgyvaayagaaldsgaikgevgekftagnlgertigenktvvvgdp
vrfnadnidkydf

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5bq3C (C:)
gcgggtstqgsesssggdasgsydvssqsitfipkqlnnpfsdvmlgggknaageigfae
vnvvgpleassssqvsfinsevqagtnvlviaandpdavcpalqdarkagtkvvtfdsds
aadcrdlfinqveskqvaitmldmvsdqiggsgkvailsatanaanqnawikfmedeias
ndkykgieivakvygddddtksfqeaqgllqahpdlnaivspttvgiaatarylstsdyk
gkvfltglglpnemrsfvkdgtvkefalwdpaqlgyvaayagaaldsgaikgevgekfta
gnlgertigenktvvvgdpvrfnadnidkydf

    Sequence, based on observed residues (ATOM records): (download) 
    >5bq3C (C:)
gsydvssqsitfipkqlnnpfsdvmlgggknaageigfaevnvvgpleassssqvsfins
evqagtnvlviaandpdavcpalqdarkagtkvvtfdsdsaadcrdlfinqveskqvait
mldmvsdqiggsgkvailsatanaanqnawikfmedeiasndkykgieivakvygddddt
ksfqeaqgllqahpdlnaivspttvgiaatarylstsdykgkvfltglglpnemrsfvkd
gtvkefalwdpaqlgyvaayagaaldsgaikgevgekftagnlgertigenktvvvgdpv
rfnadnidkydf

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5bq3D (D:)
gcgggtstqgsesssggdasgsydvssqsitfipkqlnnpfsdvmlgggknaageigfae
vnvvgpleassssqvsfinsevqagtnvlviaandpdavcpalqdarkagtkvvtfdsds
aadcrdlfinqveskqvaitmldmvsdqiggsgkvailsatanaanqnawikfmedeias
ndkykgieivakvygddddtksfqeaqgllqahpdlnaivspttvgiaatarylstsdyk
gkvfltglglpnemrsfvkdgtvkefalwdpaqlgyvaayagaaldsgaikgevgekfta
gnlgertigenktvvvgdpvrfnadnidkydf

    Sequence, based on observed residues (ATOM records): (download) 
    >5bq3D (D:)
gsydvssqsitfipkqlnnpfsdvmlgggknaageigfaevnvvgpleassssqvsfins
evqagtnvlviaandpdavcpalqdarkagtkvvtfdsdsaadcrdlfinqveskqvait
mldmvsdqiggsgkvailsatanaanqnawikfmedeiasndkykgieivakvygddddt
ksfqeaqgllqahpdlnaivspttvgiaatarylstsdykgkvfltglglpnemrsfvkd
gtvkefalwdpaqlgyvaayagaaldsgaikgevgekftagnlgertigenktvvvgdpv
rfnadnidkydf