SCOPe 2.07: Structural Classification of Proteins

PDB entry 5aew

View 5aew on RCSB PDB site
Description: Crystal structure of II9 variant of Biphenyl dioxygenase from Burkholderia xenovorans LB400 in complex with biphenyl
Class: oxidoreductase
Keywords: oxidoreductase, biphenyl dioxygenase, bphae-ii9, biphenyl, polychlorinated biphenyls
Deposited on 2015-01-10, released 2016-04-06
The last revision prior to the SCOPe 2.07 freeze date was dated 2016-05-11, with a file datestamp of 2016-05-06.
Experiment type: XRAY
Resolution: 1.88 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Biphenyl dioxygenase subunit alpha
Species: Burkholderia xenovorans LB400 [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
  - engineered mutation (334-335)
  - engineered mutation (337)
  - engineered mutation (340)
Domains in SCOPe 2.07: d5aewa1, d5aewa2
Chain 'B':
Compound: Biphenyl dioxygenase subunit beta
Species: Burkholderia xenovorans LB400 [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.07: d5aewb_
Chain 'C':
Compound: Biphenyl dioxygenase subunit alpha
Species: Burkholderia xenovorans LB400 [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
  - engineered mutation (334-335)
  - engineered mutation (337)
  - engineered mutation (340)
Domains in SCOPe 2.07: d5aewc1, d5aewc2
Chain 'D':
Compound: Biphenyl dioxygenase subunit beta
Species: Burkholderia xenovorans LB400 [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.07: d5aewd_
Chain 'E':
Compound: Biphenyl dioxygenase subunit alpha
Species: Burkholderia xenovorans LB400 [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
  - engineered mutation (334-335)
  - engineered mutation (337)
  - engineered mutation (340)
Domains in SCOPe 2.07: d5aewe1, d5aewe2
Chain 'F':
Compound: Biphenyl dioxygenase subunit beta
Species: Burkholderia xenovorans LB400 [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.07: d5aewf_
Chain 'G':
Compound: Biphenyl dioxygenase subunit alpha
Species: Burkholderia xenovorans LB400 [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
  - engineered mutation (334-335)
  - engineered mutation (337)
  - engineered mutation (340)
Domains in SCOPe 2.07: d5aewg1, d5aewg2
Chain 'H':
Compound: Biphenyl dioxygenase subunit beta
Species: Burkholderia xenovorans LB400 [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.07: d5aewh_
Chain 'I':
Compound: Biphenyl dioxygenase subunit alpha
Species: Burkholderia xenovorans LB400 [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
  - engineered mutation (334-335)
  - engineered mutation (337)
  - engineered mutation (340)
Domains in SCOPe 2.07: d5aewi1, d5aewi2
Chain 'J':
Compound: Biphenyl dioxygenase subunit beta
Species: Burkholderia xenovorans LB400 [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.07: d5aewj_
Chain 'K':
Compound: Biphenyl dioxygenase subunit alpha
Species: Burkholderia xenovorans LB400 [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
  - engineered mutation (334-335)
  - engineered mutation (337)
  - engineered mutation (340)
Domains in SCOPe 2.07: d5aewk1, d5aewk2
Chain 'L':
Compound: Biphenyl dioxygenase subunit beta
Species: Burkholderia xenovorans LB400 [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.07: d5aewl_
Chain 'M':
Compound: Biphenyl dioxygenase subunit alpha
Species: Burkholderia xenovorans LB400 [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
  - engineered mutation (334-335)
  - engineered mutation (337)
  - engineered mutation (340)
Domains in SCOPe 2.07: d5aewm1, d5aewm2
Chain 'N':
Compound: Biphenyl dioxygenase subunit beta
Species: Burkholderia xenovorans LB400 [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.07: d5aewn_
Chain 'O':
Compound: Biphenyl dioxygenase subunit alpha
Species: Burkholderia xenovorans LB400 [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
  - engineered mutation (334-335)
  - engineered mutation (337)
  - engineered mutation (340)
Domains in SCOPe 2.07: d5aewo1, d5aewo2
Chain 'P':
Compound: Biphenyl dioxygenase subunit beta
Species: Burkholderia xenovorans LB400 [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.07: d5aewp_
Chain 'Q':
Compound: Biphenyl dioxygenase subunit alpha
Species: Burkholderia xenovorans LB400 [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
  - engineered mutation (334-335)
  - engineered mutation (337)
  - engineered mutation (340)
Domains in SCOPe 2.07: d5aewq1, d5aewq2
Chain 'R':
Compound: Biphenyl dioxygenase subunit beta
Species: Burkholderia xenovorans LB400 [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.07: d5aewr_
Chain 'S':
Compound: Biphenyl dioxygenase subunit alpha
Species: Burkholderia xenovorans LB400 [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
  - engineered mutation (334-335)
  - engineered mutation (337)
  - engineered mutation (340)
Domains in SCOPe 2.07: d5aews1, d5aews2
Chain 'T':
Compound: Biphenyl dioxygenase subunit beta
Species: Burkholderia xenovorans LB400 [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.07: d5aewt_
Chain 'U':
Compound: Biphenyl dioxygenase subunit alpha
Species: Burkholderia xenovorans LB400 [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333
  - engineered mutation (334-335)
  - engineered mutation (337)
  - engineered mutation (340)
Domains in SCOPe 2.07: d5aewu1, d5aewu2
Chain 'V':
Compound: Biphenyl dioxygenase subunit beta
Species: Burkholderia xenovorans LB400 [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.07: d5aewv_
Chain 'W':
Compound: Biphenyl dioxygenase subunit alpha
Species: Burkholderia xenovorans LB400 [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37333 (Start-458)
  - engineered mutation (334-335)
  - engineered mutation (337)
  - engineered mutation (340)
Domains in SCOPe 2.07: d5aeww1, d5aeww2
Chain 'X':
Compound: Biphenyl dioxygenase subunit beta
Species: Burkholderia xenovorans LB400 [TaxId:266265]
Database cross-references and differences (RAF-indexed):
- Uniprot P37334 (Start-187)
Domains in SCOPe 2.07: d5aewx_
Heterogens: FES, FE2, BNL, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>5aewA (A:)
mssaikevqgapvkwvtnwtpeairglvdqekglldpriyadqslyelelervfgrswll
lgheshvpetgdflatymgedpvvmvrqkdksikvflnqcrhrgmricrsdagnakaftc
syhgwaydiagklvnvpfekeafcdkkegdcgfdkaewgplqarvatykglvfanwdvqa
pdletylgdarpymdvmldrtpagtvaiggmqkwvipcnwkfaaeqfcsdmyhagttthl
sgilagippemdlsqaqiptkgnqfraawgghgsgwyvdepgsllavmgpkvtqywtegp
aaelaeqrlghtgmpvrrmvgqhmtifptcsflpgintirtwhprgpneievwaftlvda
dapaeikeeyrrhnirnfsaggvfeqddgenwveiqkglrgykaksqplnaqmglgrsqt
ghpdfpgnvgyvyaeeaargmyhhwmrmmsepswatlkp