PDB entry 4ywg

View 4ywg on RCSB PDB site
Description: Crystal structure of 830A in complex with V1V2
Class: Viral protein/Immune system
Keywords: HIV-1 gp120, the V1V2 Region, antibody, complex structure, Viral protein-Immune system complex
Deposited on 2015-03-20, released 2015-07-15
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-09-13, with a file datestamp of 2017-09-08.
Experiment type: XRAY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'G':
    Compound: Scaffold HIV-1 gp120 V1V2 region derived from strain ZM109
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Database cross-references and differences (RAF-indexed):
    • PDB 4YWG (0-End)
  • Chain 'H':
    Compound: Heavy chain of anti-HIV-1 gp120 V1V2 antibody 830A
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 4YWG (0-End)
  • Chain 'I':
    Compound: Heavy chain of anti-HIV-1 gp120 V1V2 antibody 830A
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 4YWG (0-225)
  • Chain 'L':
    Compound: Light chain of anti-HIV-1 gp120 V1V2 antibody 830A
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 4YWG (0-215)
    Domains in SCOPe 2.07: d4ywgl1, d4ywgl2
  • Chain 'M':
    Compound: Light chain of anti-HIV-1 gp120 V1V2 antibody 830A
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 4YWG (0-End)
    Domains in SCOPe 2.07: d4ywgm1, d4ywgm2
  • Chain 'Q':
    Compound: Scaffold HIV-1 gp120 V1V2 region derived from strain ZM109
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Database cross-references and differences (RAF-indexed):
    • PDB 4YWG
  • Heterogens: NAG

PDB Chain Sequences:

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >4ywgL (L:)
dtvmtqspatlsvspgervtlscrasqiintnlawyqkrpgqaprlliyaasaratgipa
rfsgsgsgteftltisglqsedsavyycqqykhwppytfgrgtkleirrtvaapsvfifp
psdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstl
tlskadyekhkvyacevthqglsspvtksfnrgecs

    Sequence, based on observed residues (ATOM records): (download) 
    >4ywgL (L:)
dtvmtqspatlsvspgervtlscrasqiintnlawyqkrpgqaprlliyaasaratgipa
rfsgsgsgteftltisglqsedsavyycqqykhwppytfgrgtklapsvfifppsdeqlk
sgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltlskady
ekhkvyacevthqspvtksfnrgecs

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >4ywgM (M:)
dtvmtqspatlsvspgervtlscrasqiintnlawyqkrpgqaprlliyaasaratgipa
rfsgsgsgteftltisglqsedsavyycqqykhwppytfgrgtkleirrtvaapsvfifp
psdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstl
tlskadyekhkvyacevthqglsspvtksfnrgecs

    Sequence, based on observed residues (ATOM records): (download) 
    >4ywgM (M:)
dtvmtqspatlsvspgervtlscrasqiintnlawyqkrpgqaprlliyaasaratgipa
rfsgsgsgteftltisglqsedsavyycqqykhwppytfgrgtkleirrtvaapsvfifp
psdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstl
tlskadyekhkvyacevthqglsspvtksfnrgec

  • Chain 'Q':
    No sequence available.