PDB entry 4ndm
View 4ndm on RCSB PDB site
Description: Structure of the AB18.1 TCR
Class: immune system
Keywords: Immunoglobulin, Histocompatibility antigens, T cell receptor, Immunological, lymphocytes, T cell recognition, activation, gamma delta T cell, Human, intraepithelial lymphocytes, CD1d, glycolipids, non-classical MHC, Glycoproteins, Cell-surface receptors, Immune system
Deposited on
2013-10-27, released
2013-12-18
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-11-15, with a file datestamp of
2017-11-10.
Experiment type: XRAY
Resolution: 3.01 Å
R-factor: N/A
AEROSPACI score: 0.14
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: T-cell gamma protein,T-cell receptor beta-2 chain C region
Species: Homo sapiens [TaxId:9606]
Gene: TRBC2
Database cross-references and differences (RAF-indexed):
- Uniprot A2NUW5 (Start-117)
- Uniprot A0A0G2JNG9 (118-246)
- engineered mutation (174)
- engineered mutation (192)
- expression tag (247)
Domains in SCOPe 2.08: d4ndma1, d4ndma2, d4ndma3 - Chain 'B':
Compound: human nkt tcr alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: B2M, HDCMA22P
Database cross-references and differences (RAF-indexed):
- Uniprot Q6PJ56 (11-130)
- conflict (105-107)
- conflict (109-114)
- linker (131)
- Uniprot K7N5M3 (132-End)
Domains in SCOPe 2.08: d4ndmb1, d4ndmb2 - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4ndmA (A:)
adpssnleggtksvtrptrssaeitcdltvinafyihwylhqegkapqrllyydvsnskd
vlesglspgkyythtprrwswililrnliendsgvyycatwdrnnkklfgsgttlvvted
lknvfppevavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqp
lkeqpalndsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivs
aeawgradsrgglevlfq
Sequence, based on observed residues (ATOM records): (download)
>4ndmA (A:)
tksvtrptrssaeitcdltvinafyihwylhqegkapqrllyydvsnskdvlesglspgk
yythtprrwswililrnliendsgvyycatwdrnnkklfgsgttlvvtedlknvfppeva
vfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeqpalnds
ryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeawgrad
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4ndmB (B:)
adlsqqgeedpaqkvtqaqssvsmpvrkavtlnclyetswwsyyifwykqlpskemifli
rqgsdeqnaksgrysvnfkkaaksvaltisalqledsakyfcalgdqilywglshtdkli
fgkgtrvtvepniqnpdpavyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcv
ldmrsmdfksnsavawsnksdfacanafnnsiipedtffpspesssrgglevlfq
Sequence, based on observed residues (ATOM records): (download)
>4ndmB (B:)
aqkvtqaqssvsmpvrkavtlnclyetswwsyyifwykqlpskemiflirqgsdeqnaks
grysvnfkkaaksvaltisalqledsakyfcalgdqilywglshtdklifgkgtrvtvep
niqnpdpavyqlrdsksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsava
wsnksdfacanafnnsiipedtffpspe