PDB entry 4i9y

View 4i9y on RCSB PDB site
Description: Structure of the C-terminal domain of Nup358
Class: transport protein
Keywords: Nuclear Pore Complex, TRANSPORT PROTEIN
Deposited on 2012-12-05, released 2013-01-30
The last revision prior to the SCOPe 2.04 freeze date was dated 2013-04-24, with a file datestamp of 2013-04-19.
Experiment type: XRAY
Resolution: 1.75 Å
R-factor: 0.125
AEROSPACI score: 0.59 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: E3 SUMO-protein ligase RanBP2
    Species: Homo sapiens [TaxId:9606]
    Gene: RANBP2, NUP358
    Database cross-references and differences (RAF-indexed):
    • Uniprot P49792 (4-166)
      • expression tag (0-3)
    Domains in SCOPe 2.04: d4i9ya_
  • Chain 'B':
    Compound: E3 SUMO-protein ligase RanBP2
    Species: Homo sapiens [TaxId:9606]
    Gene: RANBP2, NUP358
    Database cross-references and differences (RAF-indexed):
    • Uniprot P49792 (4-166)
      • expression tag (0-3)
    Domains in SCOPe 2.04: d4i9yb_
  • Chain 'C':
    Compound: E3 SUMO-protein ligase RanBP2
    Species: Homo sapiens [TaxId:9606]
    Gene: RANBP2, NUP358
    Database cross-references and differences (RAF-indexed):
    • Uniprot P49792 (4-166)
      • expression tag (0-3)
    Domains in SCOPe 2.04: d4i9yc_
  • Chain 'D':
    Compound: E3 SUMO-protein ligase RanBP2
    Species: Homo sapiens [TaxId:9606]
    Gene: RANBP2, NUP358
    Database cross-references and differences (RAF-indexed):
    • Uniprot P49792 (4-166)
      • expression tag (0-3)
    Domains in SCOPe 2.04: d4i9yd_
  • Chain 'E':
    Compound: E3 SUMO-protein ligase RanBP2
    Species: Homo sapiens [TaxId:9606]
    Gene: RANBP2, NUP358
    Database cross-references and differences (RAF-indexed):
    • Uniprot P49792 (4-166)
      • expression tag (0-3)
    Domains in SCOPe 2.04: d4i9ye_
  • Chain 'F':
    Compound: E3 SUMO-protein ligase RanBP2
    Species: Homo sapiens [TaxId:9606]
    Gene: RANBP2, NUP358
    Database cross-references and differences (RAF-indexed):
    • Uniprot P49792 (4-166)
      • expression tag (0-3)
    Domains in SCOPe 2.04: d4i9yf_
  • Heterogens: GOL, CL, TLA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4i9yA (A:)
gphmtnpvvffdvcadgeplgritmelfsnivprtaenfralctgekgfgfknsifhrvi
pdfvcqggditkhdgtggqsiygdkfedenfdvkhtgpgllsmanqgqntnnsqfvitlk
kaehldfkhvvfgfvkdgmdtvkkiesfgspkgsvcrrititecgqi

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4i9yB (B:)
gphmtnpvvffdvcadgeplgritmelfsnivprtaenfralctgekgfgfknsifhrvi
pdfvcqggditkhdgtggqsiygdkfedenfdvkhtgpgllsmanqgqntnnsqfvitlk
kaehldfkhvvfgfvkdgmdtvkkiesfgspkgsvcrrititecgqi

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4i9yC (C:)
gphmtnpvvffdvcadgeplgritmelfsnivprtaenfralctgekgfgfknsifhrvi
pdfvcqggditkhdgtggqsiygdkfedenfdvkhtgpgllsmanqgqntnnsqfvitlk
kaehldfkhvvfgfvkdgmdtvkkiesfgspkgsvcrrititecgqi

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4i9yD (D:)
gphmtnpvvffdvcadgeplgritmelfsnivprtaenfralctgekgfgfknsifhrvi
pdfvcqggditkhdgtggqsiygdkfedenfdvkhtgpgllsmanqgqntnnsqfvitlk
kaehldfkhvvfgfvkdgmdtvkkiesfgspkgsvcrrititecgqi

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4i9yE (E:)
gphmtnpvvffdvcadgeplgritmelfsnivprtaenfralctgekgfgfknsifhrvi
pdfvcqggditkhdgtggqsiygdkfedenfdvkhtgpgllsmanqgqntnnsqfvitlk
kaehldfkhvvfgfvkdgmdtvkkiesfgspkgsvcrrititecgqi

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4i9yF (F:)
gphmtnpvvffdvcadgeplgritmelfsnivprtaenfralctgekgfgfknsifhrvi
pdfvcqggditkhdgtggqsiygdkfedenfdvkhtgpgllsmanqgqntnnsqfvitlk
kaehldfkhvvfgfvkdgmdtvkkiesfgspkgsvcrrititecgqi