PDB entry 4e1j

View 4e1j on RCSB PDB site
Description: Crystal structure of glycerol kinase in complex with glycerol from Sinorhizobium meliloti 1021
Class: transferase
Keywords: Structural Genomics, PSI-Biology, New York Structural Genomics Research Consortium, NYSGRC, Glycerol kinase, TRANSFERASE
Deposited on 2012-03-06, released 2012-03-21
The last revision prior to the SCOPe 2.04 freeze date was dated 2012-03-21, with a file datestamp of 2012-03-16.
Experiment type: XRAY
Resolution: 2.33 Å
R-factor: 0.233
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glycerol kinase
    Species: Sinorhizobium meliloti [TaxId:266834]
    Gene: glpK, RB1135, SMb21009
    Database cross-references and differences (RAF-indexed):
    • Uniprot O86033 (23-End)
      • expression tag (11-22)
    Domains in SCOPe 2.04: d4e1ja1, d4e1ja2
  • Chain 'B':
    Compound: glycerol kinase
    Species: Sinorhizobium meliloti [TaxId:266834]
    Gene: glpK, RB1135, SMb21009
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d4e1jb1, d4e1jb2
  • Chain 'C':
    Compound: glycerol kinase
    Species: Sinorhizobium meliloti [TaxId:266834]
    Gene: glpK, RB1135, SMb21009
    Database cross-references and differences (RAF-indexed):
    • Uniprot O86033 (23-End)
      • expression tag (6-22)
    Domains in SCOPe 2.04: d4e1jc1, d4e1jc2
  • Chain 'D':
    Compound: glycerol kinase
    Species: Sinorhizobium meliloti [TaxId:266834]
    Gene: glpK, RB1135, SMb21009
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d4e1jd1, d4e1jd2
  • Heterogens: GOL, NA, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4e1jA (A:)
mhhhhhhssgvdlgtenlyfqsmmggyilaidqgttstraivfdgnqkiagvgqkefkqh
fpksgwvehdpeeiwqtvvstvkeaieksgitandiaaigitnqretvvvwdretgkpih
naivwqdrrtaafcdklkkkglektfvkktgllldpyfsgtklnwllsnvkgaqvraakg
elcfgtidtfliwrltggecfctdatnasrtllyniaenawddeltevlrvpkemlpevk
dcaadfgvtdpslfgaaipilgvagdqqaatigqacfkpgmlkstygtgcfallntgkdm
vrsknrllttiayrldgettyalegsifvagaavqwlrdglkvikaapdtgslaesadps
qevylvpaftglgaphwdpdargaifgmtrntgpaefaraaleavcyqtrdlleamhkdw
rrngndtvlrvdggmvasdwtmqrlsdlldapvdrpvilettalgvawlagsragvwpnq
eafakswardrrfephmdeatrkvklkgwrsavkrtliaa

    Sequence, based on observed residues (ATOM records): (download) 
    >4e1jA (A:)
dlgtenlyfqsmmggyilaidqgttstraivfdgnqkiagvgqkefkqhfpksgwvehdp
eeiwqtvvstvkeaieksgitandiaaigitnqretvvvwdretgkpihnaivwqdrrta
afcdklkkkglektfvkktgllldpyfsgtklnwllsnvkgaqvraakgelcfgtidtfl
iwrltggecfctdatnasrtllyniaenawddeltevlrvpkemlpevkdcaadfgvtdp
slfgaaipilgvagdqqaatigqacfkpgmlkstygtgcfallntgkdmvrsknrlltti
ayrldgettyalegsifvagaavqwlrdglkvitgslaesadpsqevylvpaftglgaph
wdpdargaifgmtrntgpaefaraaleavcyqtrdlleamhkdwrtvlrvdggmvasdwt
mqrlsdlldapvdrpvilettalgvawlagsragvwpnqeafakswardrrfephmdeat
rkvklkgwrsavkrtlia

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4e1jB (B:)
mhhhhhhssgvdlgtenlyfqsmmggyilaidqgttstraivfdgnqkiagvgqkefkqh
fpksgwvehdpeeiwqtvvstvkeaieksgitandiaaigitnqretvvvwdretgkpih
naivwqdrrtaafcdklkkkglektfvkktgllldpyfsgtklnwllsnvkgaqvraakg
elcfgtidtfliwrltggecfctdatnasrtllyniaenawddeltevlrvpkemlpevk
dcaadfgvtdpslfgaaipilgvagdqqaatigqacfkpgmlkstygtgcfallntgkdm
vrsknrllttiayrldgettyalegsifvagaavqwlrdglkvikaapdtgslaesadps
qevylvpaftglgaphwdpdargaifgmtrntgpaefaraaleavcyqtrdlleamhkdw
rrngndtvlrvdggmvasdwtmqrlsdlldapvdrpvilettalgvawlagsragvwpnq
eafakswardrrfephmdeatrkvklkgwrsavkrtliaa

    Sequence, based on observed residues (ATOM records): (download) 
    >4e1jB (B:)
gyilaidqgttstraivfdgnqkiagvgqkefkqhfpksgwvehdpeeiwqtvvstvkea
ieksgitandiaaigitnqretvvvwdretgkpihnaivwqdrrtaafcdklkkkglekt
fvkktgllldpyfsgtklnwllsnvkgaqvraakgelcfgtidtfliwrltggecfctda
tnasrtllyniaenawddeltevlrvpkemlpevkdcaadfgvtdpslfgaaipilgvag
dqqaatigqacfkpgmlkstygtgcfallntgkdmvrsknrllttiayrldgettyaleg
sifvagaavqwlrdglkvitgslaesadpsqevylvpaftglgaphwdpdargaifgmtr
ntgpaefaraaleavcyqtrdlleamhkdwrtvlrvdggmvasdwtmqrlsdlldapvdr
pvilettalgvawlagsragvwpnqeafakswardrrfephmdeatrkvklkgwrsavkr
tlia

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4e1jC (C:)
mhhhhhhssgvdlgtenlyfqsmmggyilaidqgttstraivfdgnqkiagvgqkefkqh
fpksgwvehdpeeiwqtvvstvkeaieksgitandiaaigitnqretvvvwdretgkpih
naivwqdrrtaafcdklkkkglektfvkktgllldpyfsgtklnwllsnvkgaqvraakg
elcfgtidtfliwrltggecfctdatnasrtllyniaenawddeltevlrvpkemlpevk
dcaadfgvtdpslfgaaipilgvagdqqaatigqacfkpgmlkstygtgcfallntgkdm
vrsknrllttiayrldgettyalegsifvagaavqwlrdglkvikaapdtgslaesadps
qevylvpaftglgaphwdpdargaifgmtrntgpaefaraaleavcyqtrdlleamhkdw
rrngndtvlrvdggmvasdwtmqrlsdlldapvdrpvilettalgvawlagsragvwpnq
eafakswardrrfephmdeatrkvklkgwrsavkrtliaa

    Sequence, based on observed residues (ATOM records): (download) 
    >4e1jC (C:)
hssgvdlgtenlyfqsmmggyilaidqgttstraivfdgnqkiagvgqkefkqhfpksgw
vehdpeeiwqtvvstvkeaieksgitandiaaigitnqretvvvwdretgkpihnaivwq
drrtaafcdklkkkglektfvkktgllldpyfsgtklnwllsnvkgaqvraakgelcfgt
idtfliwrltggecfctdatnasrtllyniaenawddeltevlrvpkemlpevkdcaadf
gvtdpslfgaaipilgvagdqqaatigqacfkpgmlkstygtgcfallntgkdmvrsknr
llttiayrldgettyalegsifvagaavqwlrdglkvitgslaesadpsqevylvpaftg
lgaphwdpdargaifgmtrntgpaefaraaleavcyqtrdlleamhkdwrtvlrvdggmv
asdwtmqrlsdlldapvdrpvilettalgvawlagsragvwpnqeafakswardrrfeph
mdeatrkvklkgwrsavkrtlia

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4e1jD (D:)
mhhhhhhssgvdlgtenlyfqsmmggyilaidqgttstraivfdgnqkiagvgqkefkqh
fpksgwvehdpeeiwqtvvstvkeaieksgitandiaaigitnqretvvvwdretgkpih
naivwqdrrtaafcdklkkkglektfvkktgllldpyfsgtklnwllsnvkgaqvraakg
elcfgtidtfliwrltggecfctdatnasrtllyniaenawddeltevlrvpkemlpevk
dcaadfgvtdpslfgaaipilgvagdqqaatigqacfkpgmlkstygtgcfallntgkdm
vrsknrllttiayrldgettyalegsifvagaavqwlrdglkvikaapdtgslaesadps
qevylvpaftglgaphwdpdargaifgmtrntgpaefaraaleavcyqtrdlleamhkdw
rrngndtvlrvdggmvasdwtmqrlsdlldapvdrpvilettalgvawlagsragvwpnq
eafakswardrrfephmdeatrkvklkgwrsavkrtliaa

    Sequence, based on observed residues (ATOM records): (download) 
    >4e1jD (D:)
gyilaidqgttstraivfkiagvgqkefkqhfpkwvehdpeeiwqtvvstvkeaiektan
diaaigitnqretvvvwdretgkpihnaivwqdrrtaafcdklkkkglektfvkktglll
dpyfsgtklnwllsnvkgaqvraakgelcfgtidtfliwrltggecfctdatnasrtlly
niaenawddeltevlrvpkemlpevkdcaadfgvtdgaaipilgvagdqqaatigqacfk
lkstygtgcfallntgkmvrsknrllttiayrldgettyalegsifvagaavqwlrdglk
viktgslaesadpsqevylvpaftglgaphwdpdargaifgmtrntgpaefaraaleavc
yqtrdlleamhkdwrvdggmvasdwtmqrlsdlldapvdrpakswardrrfephmdeatr
kvklkgwrsavkrtlia