PDB entry 4dga

View 4dga on RCSB PDB site
Description: TRIMCyp cyclophilin domain from Macaca mulatta: HIV-1 CA(O-loop) complex
Class: isomerase/viral protein
Keywords: anti-viral protein, ISOMERASE-VIRAL PROTEIN complex
Deposited on 2012-01-25, released 2012-02-08
The last revision prior to the SCOPe 2.04 freeze date was dated 2012-04-18, with a file datestamp of 2012-04-13.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.198
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: trimcyp
    Species: Macaca mulatta [TaxId:9544]
    Gene: TRIMCyp
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d4dgaa_
  • Chain 'B':
    Compound: trimcyp
    Species: Macaca mulatta [TaxId:9544]
    Gene: TRIMCyp
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d4dgab_
  • Chain 'C':
    Compound: capsid protein
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Gene: GAG
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q72497 (1-145)
      • engineered mutation (83)
      • engineered mutation (86-88)
      • engineered mutation (91-92)
      • engineered mutation (96)
      • engineered mutation (100)
    Domains in SCOPe 2.04: d4dgac_
  • Chain 'D':
    Compound: capsid protein
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Gene: GAG
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q72497 (1-End)
      • engineered mutation (83)
      • engineered mutation (86-88)
      • engineered mutation (91-92)
      • engineered mutation (96)
      • engineered mutation (100)
    Domains in SCOPe 2.04: d4dgad_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4dgaA (A:)
mvnptvffdiavdgeplgrvsfelfadkvpktaenfralstgekgfgykgscfhriipgf
mcqggnfthhngtggksiygekfedenfilkhtgpgilsmanagpntngsqffictakte
wldgkhvvfgkvkegmniveamerfgsrngktskkitiadcgqle

    Sequence, based on observed residues (ATOM records): (download) 
    >4dgaA (A:)
vnptvffdiavdgeplgrvsfelfadkvpktaenfralstgekgfgykgscfhriipgfm
cqggnfthgtggksiygekfedenfilkhtgpgilsmanagpntngsqffictaktewld
gkhvvfgkvkegmniveamerfgsrngktskkitiadcgql

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4dgaB (B:)
mvnptvffdiavdgeplgrvsfelfadkvpktaenfralstgekgfgykgscfhriipgf
mcqggnfthhngtggksiygekfedenfilkhtgpgilsmanagpntngsqffictakte
wldgkhvvfgkvkegmniveamerfgsrngktskkitiadcgqle

    Sequence, based on observed residues (ATOM records): (download) 
    >4dgaB (B:)
vnptvffdiavdgeplgrvsfelfadkvpktaenfralstgekgfgykgscfhriipgfm
cqggnfthgksiygekfedenfilkhtgpgilsmanagpntngsqffictaktewldgkh
vvfgkvkegmniveamerfgsrngktskkitiadcgqle

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4dgaC (C:)
mpivqnlqgqmvhqaisprtlnawvkvveekafspevipmfsalsegatpqdlntmlntv
gghqaamqmlketineeaaewdrthppamgplppgqireptgsdiagttstlqeqigwmt
hnppipvgeiykrwiilglnkivrmy

    Sequence, based on observed residues (ATOM records): (download) 
    >4dgaC (C:)
pivvhqaisprtlnawvkvveekafspevipmfsalsegatpqdlntmlntvgghqaamq
mlketineeaaewdrthppamgplppgqireptgsdiagttstlqeqigwmthnppipvg
eiykrwiilglnkivrmy

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4dgaD (D:)
mpivqnlqgqmvhqaisprtlnawvkvveekafspevipmfsalsegatpqdlntmlntv
gghqaamqmlketineeaaewdrthppamgplppgqireptgsdiagttstlqeqigwmt
hnppipvgeiykrwiilglnkivrmy

    Sequence, based on observed residues (ATOM records): (download) 
    >4dgaD (D:)
pivhqaisprtlnawvkvveekafspevipmfsalsegatpqdlntmlntvgghqaamqm
lketineeaaewdrthppamgplppgqireptgsdiagttstlqeqigwmthnppipvge
iykrwiilglnkiv