PDB entry 4aky

View 4aky on RCSB PDB site
Description: CRYSTAL STRUCTURE OF VIRB8 FROM BRUCELLA SUIS IN COMPLEX WITH INTERACTION INHIBITOR 2-(butylamino)-8-quinolinol
Class: transport protein
Keywords: transport protein, bacterial type IV secretion
Deposited on 2012-02-29, released 2012-09-05
The last revision prior to the SCOPe 2.04 freeze date was dated 2012-09-05, with a file datestamp of 2012-08-31.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.1993
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: type IV secretion system protein virb8
    Species: Brucella suis [TaxId:29461]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d4akya_
  • Chain 'B':
    Compound: type IV secretion system protein virb8
    Species: Brucella suis [TaxId:29461]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d4akyb_
  • Chain 'C':
    Compound: type IV secretion system protein virb8
    Species: Brucella suis [TaxId:29461]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d4akyc_
  • Chain 'D':
    Compound: type IV secretion system protein virb8
    Species: Brucella suis [TaxId:29461]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d4akyd_
  • Chain 'E':
    Compound: type IV secretion system protein virb8
    Species: Brucella suis [TaxId:29461]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d4akye_
  • Heterogens: 4LL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4akyA (A:)
sydtvmdkywlsqyviaretydwytlqkdyetvgmlsspsegqsyasqfqgdkaldkqyg
snvrtsvtivsivpngkgigtvrfakttkrtnetgdgetthwiatigyqyvnpslmsesa
rltnplgfnvtsyrvdpe

    Sequence, based on observed residues (ATOM records): (download) 
    >4akyA (A:)
sydtvmdkywlsqyviaretydwytlqkdyetvgmlsspsegqsyasqfqgdkaldkqyg
snvrtsvtivsivpngkgigtvrfakttkrtdgetthwiatigyqyvnpslmsesarltn
plgfnvtsyrvdpe

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4akyB (B:)
sydtvmdkywlsqyviaretydwytlqkdyetvgmlsspsegqsyasqfqgdkaldkqyg
snvrtsvtivsivpngkgigtvrfakttkrtnetgdgetthwiatigyqyvnpslmsesa
rltnplgfnvtsyrvdpe

    Sequence, based on observed residues (ATOM records): (download) 
    >4akyB (B:)
sydtvmdkywlsqyviaretydwytlqkdyetvgmlsspsegqsyasqfqgdkaldkqyg
snvrtsvtivsivpngkgigtvrfakttkrtdgetthwiatigyqyvnpslmsesarltn
plgfnvtsyrvdpe

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4akyC (C:)
sydtvmdkywlsqyviaretydwytlqkdyetvgmlsspsegqsyasqfqgdkaldkqyg
snvrtsvtivsivpngkgigtvrfakttkrtnetgdgetthwiatigyqyvnpslmsesa
rltnplgfnvtsyrvdpe

    Sequence, based on observed residues (ATOM records): (download) 
    >4akyC (C:)
sydtvmdkywlsqyviaretydwytlqkdyetvgmlsspsegqsyasqfqgdkaldkqyg
snvrtsvtivsivpngkgigtvrfakttkrtdgetthwiatigyqyvnpslmsesarltn
plgfnvtsyrvdpe

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4akyD (D:)
sydtvmdkywlsqyviaretydwytlqkdyetvgmlsspsegqsyasqfqgdkaldkqyg
snvrtsvtivsivpngkgigtvrfakttkrtnetgdgetthwiatigyqyvnpslmsesa
rltnplgfnvtsyrvdpe

    Sequence, based on observed residues (ATOM records): (download) 
    >4akyD (D:)
sydtvmdkywlsqyviaretydwytlqkdyetvgmlsspsegqsyasqfqgdkaldkqyg
snvrtsvtivsivpngkgigtvrfakttkrtdgetthwiatigyqyvnpslmsesarltn
plgfnvtsyrvdpe

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4akyE (E:)
sydtvmdkywlsqyviaretydwytlqkdyetvgmlsspsegqsyasqfqgdkaldkqyg
snvrtsvtivsivpngkgigtvrfakttkrtnetgdgetthwiatigyqyvnpslmsesa
rltnplgfnvtsyrvdpe

    Sequence, based on observed residues (ATOM records): (download) 
    >4akyE (E:)
sydtvmdkywlsqyviaretydwytlqkdyetvgmlsspsegqsyasqfqgdkaldkqyg
snvrtsvtivsivpngkgigtvrfakttkrtdgetthwiatigyqyvnpslmsesarltn
plgfnvtsyrvdpe