PDB entry 3w9t

View 3w9t on RCSB PDB site
Description: pore-forming CEL-III
Class: toxin
Keywords: Hemolytic lectin, Pore forming toxin, TOXIN
Deposited on 2013-04-16, released 2014-03-19
The last revision prior to the SCOPe 2.04 freeze date was dated 2014-03-19, with a file datestamp of 2014-03-14.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.241
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hemolytic lectin CEL-III
    Species: Cucumaria echinata [TaxId:40245]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q868M7 (1-431)
      • expression tag (0)
      • engineered mutation (14-15)
      • engineered mutation (35)
      • engineered mutation (47)
      • engineered mutation (91)
      • engineered mutation (94)
      • engineered mutation (96)
      • engineered mutation (121)
      • engineered mutation (145)
      • engineered mutation (172)
      • engineered mutation (203)
      • engineered mutation (339)
      • engineered mutation (403)
      • deletion (145)
    Domains in SCOPe 2.04: d3w9ta1, d3w9ta2, d3w9ta3
  • Chain 'B':
    Compound: hemolytic lectin CEL-III
    Species: Cucumaria echinata [TaxId:40245]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q868M7 (1-431)
      • expression tag (0)
      • engineered mutation (14-15)
      • engineered mutation (35)
      • engineered mutation (47)
      • engineered mutation (91)
      • engineered mutation (94)
      • engineered mutation (96)
      • engineered mutation (121)
      • engineered mutation (145)
      • engineered mutation (172)
      • engineered mutation (203)
      • engineered mutation (339)
      • engineered mutation (403)
      • deletion (145)
    Domains in SCOPe 2.04: d3w9tb1, d3w9tb2, d3w9tb3
  • Chain 'C':
    Compound: hemolytic lectin CEL-III
    Species: Cucumaria echinata [TaxId:40245]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q868M7 (1-431)
      • expression tag (0)
      • engineered mutation (14-15)
      • engineered mutation (35)
      • engineered mutation (47)
      • engineered mutation (91)
      • engineered mutation (94)
      • engineered mutation (96)
      • engineered mutation (121)
      • engineered mutation (145)
      • engineered mutation (172)
      • engineered mutation (203)
      • engineered mutation (339)
      • engineered mutation (403)
      • deletion (145)
    Domains in SCOPe 2.04: d3w9tc1, d3w9tc2, d3w9tc3
  • Chain 'D':
    Compound: hemolytic lectin CEL-III
    Species: Cucumaria echinata [TaxId:40245]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q868M7 (1-431)
      • expression tag (0)
      • engineered mutation (14-15)
      • engineered mutation (35)
      • engineered mutation (47)
      • engineered mutation (91)
      • engineered mutation (94)
      • engineered mutation (96)
      • engineered mutation (121)
      • engineered mutation (145)
      • engineered mutation (172)
      • engineered mutation (203)
      • engineered mutation (339)
      • engineered mutation (403)
      • deletion (145)
    Domains in SCOPe 2.04: d3w9td1, d3w9td2, d3w9td3
  • Chain 'E':
    Compound: hemolytic lectin CEL-III
    Species: Cucumaria echinata [TaxId:40245]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q868M7 (1-431)
      • expression tag (0)
      • engineered mutation (14-15)
      • engineered mutation (35)
      • engineered mutation (47)
      • engineered mutation (91)
      • engineered mutation (94)
      • engineered mutation (96)
      • engineered mutation (121)
      • engineered mutation (145)
      • engineered mutation (172)
      • engineered mutation (203)
      • engineered mutation (339)
      • engineered mutation (403)
      • deletion (145)
    Domains in SCOPe 2.04: d3w9te1, d3w9te2, d3w9te3
  • Chain 'F':
    Compound: hemolytic lectin CEL-III
    Species: Cucumaria echinata [TaxId:40245]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q868M7 (1-431)
      • expression tag (0)
      • engineered mutation (14-15)
      • engineered mutation (35)
      • engineered mutation (47)
      • engineered mutation (91)
      • engineered mutation (94)
      • engineered mutation (96)
      • engineered mutation (121)
      • engineered mutation (145)
      • engineered mutation (172)
      • engineered mutation (203)
      • engineered mutation (339)
      • engineered mutation (403)
      • deletion (145)
    Domains in SCOPe 2.04: d3w9tf1, d3w9tf2, d3w9tf3
  • Chain 'G':
    Compound: hemolytic lectin CEL-III
    Species: Cucumaria echinata [TaxId:40245]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q868M7 (1-431)
      • expression tag (0)
      • engineered mutation (14-15)
      • engineered mutation (35)
      • engineered mutation (47)
      • engineered mutation (91)
      • engineered mutation (94)
      • engineered mutation (96)
      • engineered mutation (121)
      • engineered mutation (145)
      • engineered mutation (172)
      • engineered mutation (203)
      • engineered mutation (339)
      • engineered mutation (403)
      • deletion (145)
    Domains in SCOPe 2.04: d3w9tg1, d3w9tg2, d3w9tg3
  • Heterogens: W9T, CA, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3w9tA (A:)
evlctnpldigelrsfkskqcvdivgnqgsgniatydcdglsdqqiiicgdgtirnearn
ycftpdgsgnanvmsspctlypeipssqrwrqgrrktftdnggieqvateiinlasgkcl
diegsdgtgdigvydcqnlddqyfyvrsrgpelfygrlrneksdlcldvegsdgkgnvlm
yscednldqwfryyengeivnaksgmcldvegsdgsgnvgiyrcddlrdqmwsrpnaycn
gdycsflnkesnkcldvsgdqgtgdvgtwqcdglpdqrfkwvfddwevptatwnmvgcdq
ngkvsqqisntisfsstvtagvavevsstiekgvifakatvsvkvtaslskawtnsqsgt
taitytcdnydsdeeftrgcmwqlaiettevksgdllvwnpqivkctrsntapgcapftk
canedctfctdi

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3w9tB (B:)
evlctnpldigelrsfkskqcvdivgnqgsgniatydcdglsdqqiiicgdgtirnearn
ycftpdgsgnanvmsspctlypeipssqrwrqgrrktftdnggieqvateiinlasgkcl
diegsdgtgdigvydcqnlddqyfyvrsrgpelfygrlrneksdlcldvegsdgkgnvlm
yscednldqwfryyengeivnaksgmcldvegsdgsgnvgiyrcddlrdqmwsrpnaycn
gdycsflnkesnkcldvsgdqgtgdvgtwqcdglpdqrfkwvfddwevptatwnmvgcdq
ngkvsqqisntisfsstvtagvavevsstiekgvifakatvsvkvtaslskawtnsqsgt
taitytcdnydsdeeftrgcmwqlaiettevksgdllvwnpqivkctrsntapgcapftk
canedctfctdi

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3w9tC (C:)
evlctnpldigelrsfkskqcvdivgnqgsgniatydcdglsdqqiiicgdgtirnearn
ycftpdgsgnanvmsspctlypeipssqrwrqgrrktftdnggieqvateiinlasgkcl
diegsdgtgdigvydcqnlddqyfyvrsrgpelfygrlrneksdlcldvegsdgkgnvlm
yscednldqwfryyengeivnaksgmcldvegsdgsgnvgiyrcddlrdqmwsrpnaycn
gdycsflnkesnkcldvsgdqgtgdvgtwqcdglpdqrfkwvfddwevptatwnmvgcdq
ngkvsqqisntisfsstvtagvavevsstiekgvifakatvsvkvtaslskawtnsqsgt
taitytcdnydsdeeftrgcmwqlaiettevksgdllvwnpqivkctrsntapgcapftk
canedctfctdi

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3w9tD (D:)
evlctnpldigelrsfkskqcvdivgnqgsgniatydcdglsdqqiiicgdgtirnearn
ycftpdgsgnanvmsspctlypeipssqrwrqgrrktftdnggieqvateiinlasgkcl
diegsdgtgdigvydcqnlddqyfyvrsrgpelfygrlrneksdlcldvegsdgkgnvlm
yscednldqwfryyengeivnaksgmcldvegsdgsgnvgiyrcddlrdqmwsrpnaycn
gdycsflnkesnkcldvsgdqgtgdvgtwqcdglpdqrfkwvfddwevptatwnmvgcdq
ngkvsqqisntisfsstvtagvavevsstiekgvifakatvsvkvtaslskawtnsqsgt
taitytcdnydsdeeftrgcmwqlaiettevksgdllvwnpqivkctrsntapgcapftk
canedctfctdi

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3w9tE (E:)
evlctnpldigelrsfkskqcvdivgnqgsgniatydcdglsdqqiiicgdgtirnearn
ycftpdgsgnanvmsspctlypeipssqrwrqgrrktftdnggieqvateiinlasgkcl
diegsdgtgdigvydcqnlddqyfyvrsrgpelfygrlrneksdlcldvegsdgkgnvlm
yscednldqwfryyengeivnaksgmcldvegsdgsgnvgiyrcddlrdqmwsrpnaycn
gdycsflnkesnkcldvsgdqgtgdvgtwqcdglpdqrfkwvfddwevptatwnmvgcdq
ngkvsqqisntisfsstvtagvavevsstiekgvifakatvsvkvtaslskawtnsqsgt
taitytcdnydsdeeftrgcmwqlaiettevksgdllvwnpqivkctrsntapgcapftk
canedctfctdi

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3w9tF (F:)
evlctnpldigelrsfkskqcvdivgnqgsgniatydcdglsdqqiiicgdgtirnearn
ycftpdgsgnanvmsspctlypeipssqrwrqgrrktftdnggieqvateiinlasgkcl
diegsdgtgdigvydcqnlddqyfyvrsrgpelfygrlrneksdlcldvegsdgkgnvlm
yscednldqwfryyengeivnaksgmcldvegsdgsgnvgiyrcddlrdqmwsrpnaycn
gdycsflnkesnkcldvsgdqgtgdvgtwqcdglpdqrfkwvfddwevptatwnmvgcdq
ngkvsqqisntisfsstvtagvavevsstiekgvifakatvsvkvtaslskawtnsqsgt
taitytcdnydsdeeftrgcmwqlaiettevksgdllvwnpqivkctrsntapgcapftk
canedctfctdi

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3w9tG (G:)
evlctnpldigelrsfkskqcvdivgnqgsgniatydcdglsdqqiiicgdgtirnearn
ycftpdgsgnanvmsspctlypeipssqrwrqgrrktftdnggieqvateiinlasgkcl
diegsdgtgdigvydcqnlddqyfyvrsrgpelfygrlrneksdlcldvegsdgkgnvlm
yscednldqwfryyengeivnaksgmcldvegsdgsgnvgiyrcddlrdqmwsrpnaycn
gdycsflnkesnkcldvsgdqgtgdvgtwqcdglpdqrfkwvfddwevptatwnmvgcdq
ngkvsqqisntisfsstvtagvavevsstiekgvifakatvsvkvtaslskawtnsqsgt
taitytcdnydsdeeftrgcmwqlaiettevksgdllvwnpqivkctrsntapgcapftk
canedctfctdi