PDB entry 3vmk

View 3vmk on RCSB PDB site
Description: 3-isopropylmalate dehydrogenase from Shewanella benthica DB21 MT-2
Class: oxidoreductase
Keywords: oxidoreductase, decarboxylating dehydrogenase
Deposited on 2011-12-13, released 2012-02-29
The last revision prior to the SCOPe 2.03 freeze date was dated 2013-06-12, with a file datestamp of 2013-06-07.
Experiment type: XRAY
Resolution: 1.48 Å
R-factor: 0.195
AEROSPACI score: 0.63 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 3-isopropylmalate dehydrogenase
    Species: Shewanella benthica [TaxId:43661]
    Gene: LEUB
    Database cross-references and differences (RAF-indexed):
    • Uniprot D2YZL2 (12-End)
      • expression tag (5-11)
    Domains in SCOPe 2.03: d3vmka_
  • Chain 'B':
    Compound: 3-isopropylmalate dehydrogenase
    Species: Shewanella benthica [TaxId:43661]
    Gene: LEUB
    Database cross-references and differences (RAF-indexed):
    • Uniprot D2YZL2 (12-End)
      • expression tag (6-11)
    Domains in SCOPe 2.03: d3vmkb_
  • Heterogens: IPM, MG, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3vmkA (A:)
mrgshhhhhhgssyqiavlagdgigpevmaearkvlaavekrfdlsieyseydvggaaid
nhgcplpeatlkgceaadavlfgsvggpkwehlppndqpergallplrghfelfcnmrpa
klhpglehmsplrsdisekgfdilcvreltggiyfgkpkgrqgegeneeafdtmrysrke
irriakiafesaqgrrkkvtsvdkanvlacsvlwrevveevakdypdvelehiyidnatm
qllrrpnefdvmlcsnlfgdivsdeiamltgsmgllasismnsqgfgmyepaggsapdia
gqgianpvaqilsaalllrhslkledaalaieaavskalsdgyltcellpasersqakst
sqmgdyiaqaiaegv

    Sequence, based on observed residues (ATOM records): (download) 
    >3vmkA (A:)
hhhhhgssyqiavlagdgigpevmaearkvlaavekrfdlsieyseydvggaaidnhgcp
lpeatlkgceaadavlfgsvggpkwehlppndqpergallplrghfelfcnmrpaklhpg
lehmsplrsdisekgfdilcvreltggiyfgkpkgrqgegeneeafdtmrysrkeirria
kiafesaqgrrkkvtsvdkanvlacsvlwrevveevakdypdvelehiyidnatmqllrr
pnefdvmlcsnlfgdivsdeiamltgsmgllasismnsqgfgmyepaggsapdiagqgia
npvaqilsaalllrhslkledaalaieaavskalsdgyltcellpasersqakstsqmgd
yiaqaiaeg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3vmkB (B:)
mrgshhhhhhgssyqiavlagdgigpevmaearkvlaavekrfdlsieyseydvggaaid
nhgcplpeatlkgceaadavlfgsvggpkwehlppndqpergallplrghfelfcnmrpa
klhpglehmsplrsdisekgfdilcvreltggiyfgkpkgrqgegeneeafdtmrysrke
irriakiafesaqgrrkkvtsvdkanvlacsvlwrevveevakdypdvelehiyidnatm
qllrrpnefdvmlcsnlfgdivsdeiamltgsmgllasismnsqgfgmyepaggsapdia
gqgianpvaqilsaalllrhslkledaalaieaavskalsdgyltcellpasersqakst
sqmgdyiaqaiaegv

    Sequence, based on observed residues (ATOM records): (download) 
    >3vmkB (B:)
hhhhgssyqiavlagdgigpevmaearkvlaavekrfdlsieyseydvggaaidnhgcpl
peatlkgceaadavlfgsvggpkwehlppndqpergallplrghfelfcnmrpaklhpgl
ehmsplrsdisekgfdilcvreltggiyfgkpkgrqgegeneeafdtmrysrkeirriak
iafesaqgrrkkvtsvdkanvlacsvlwrevveevakdypdvelehiyidnatmqllrrp
nefdvmlcsnlfgdivsdeiamltgsmgllasismnsqgfgmyepaggsapdiagqgian
pvaqilsaalllrhslkledaalaieaavskalsdgyltcellpasersqakstsqmgdy
iaqaiaeg