PDB entry 3upd

View 3upd on RCSB PDB site
Description: 2.9 Angstrom Crystal Structure of Ornithine Carbamoyltransferase (ArgF) from Vibrio vulnificus
Class: transferase
Keywords: Structural Genomics, Center for Structural Genomics of Infectious Diseases, CSGID, Alpha and beta proteins (a/b), ATC-like, Aspartate/ornithine carbamoyltransferase, TRANSFERASE
Deposited on 2011-11-17, released 2011-12-07
The last revision prior to the SCOPe 2.04 freeze date was dated 2011-12-07, with a file datestamp of 2011-12-02.
Experiment type: XRAY
Resolution: 2.91 Å
R-factor: 0.16
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ornithine carbamoyltransferase
    Species: Vibrio vulnificus [TaxId:216895]
    Gene: argF, VV1_1466
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8DCF5 (24-357)
      • expression tag (1-6)
      • expression tag (18-23)
    Domains in SCOPe 2.04: d3upda1, d3upda2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3updA (A:)
mhhhhhhssgvdlgtenlyfqsnamafnlrnrnflklldfstkeiqflidlsadlkkaky
agteqkkllgknialifekastrtrcafevaafdqgaqvtyigpsgsqigdkesmkdtar
vlgrmydgiqyrgfgqaiveelgafagvpvwngltdefhptqiladfltmlehsqgkala
diqfaylgdarnnvgnslmvgaakmgmdirlvgpqaywpdeelvaacqaiakqtggkitl
tenvaegvqgcdflytdvwvsmgespeawdervalmkpyqvnmnvlkqtgnpnvkfmhcl
pafhndettigkqvadkfgmkglevteevfesehsivfdeaenrmhtikavmvatlgs

    Sequence, based on observed residues (ATOM records): (download) 
    >3updA (A:)
hhhhhhyfqsnamafnlrnrnflklldfstkeiqflidlsadlkkakyagteqkkllgkn
ialifekastrtrcafevaafdqgaqvtyigpsgsqigdkesmkdtarvlgrmydgiqyr
gfgqaiveelgafagvpvwngltdefhptqiladfltmlehsqgkaladiqfaylgdarn
nvgnslmvgaakmgmdirlvgpqaywpdeelvaacqaiakqtggkitltenvaegvqgcd
flytdvwvsmgespeawdervalmkpyqvnmnvlkqtgnpnvkfmhclpafhndettigk
qvadkfgmkglevteevfesehsivfdeaenrmhtikavmvatlgs