PDB entry 3tcf

View 3tcf on RCSB PDB site
Description: Crystal structure of E. coli OppA complexed with endogenous ligands
Class: protein transport
Keywords: Peptide-binding protein, PROTEIN TRANSPORT, peptide transport, ABC transporter
Deposited on 2011-08-09, released 2011-10-12
The last revision prior to the SCOPe 2.01 freeze date was dated 2012-01-11, with a file datestamp of 2012-01-06.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.231
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: periplasmic oligopeptide-binding protein
    Species: Escherichia coli [TaxId:83333]
    Gene: b1243, JW1235, oppA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3tcfa_
  • Chain 'B':
    Compound: periplasmic oligopeptide-binding protein
    Species: Escherichia coli [TaxId:83333]
    Gene: b1243, JW1235, oppA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3tcfb_
  • Chain 'C':
    Compound: periplasmic oligopeptide-binding protein
    Species: Escherichia coli [TaxId:83333]
    Gene: b1243, JW1235, oppA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3tcfc_
  • Chain 'D':
    Compound: periplasmic oligopeptide-binding protein
    Species: Escherichia coli [TaxId:83333]
    Gene: b1243, JW1235, oppA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3tcfd_
  • Chain 'E':
    Compound: periplasmic oligopeptide-binding protein
    Species: Escherichia coli [TaxId:83333]
    Gene: b1243, JW1235, oppA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3tcfe_
  • Chain 'F':
    Compound: periplasmic oligopeptide-binding protein
    Species: Escherichia coli [TaxId:83333]
    Gene: b1243, JW1235, oppA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3tcff_
  • Chain 'G':
    Compound: periplasmic oligopeptide-binding protein
    Species: Escherichia coli [TaxId:83333]
    Gene: b1243, JW1235, oppA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3tcfg_
  • Chain 'H':
    Compound: periplasmic oligopeptide-binding protein
    Species: Escherichia coli [TaxId:83333]
    Gene: b1243, JW1235, oppA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3tcfh_
  • Chain 'I':
    Compound: Endogenous peptide
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 3TCF (0-2)
  • Chain 'J':
    Compound: Endogenous peptide
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 3TCF (0-2)
  • Chain 'K':
    Compound: Endogenous peptide
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 3TCF (0-2)
  • Chain 'L':
    Compound: Endogenous peptide
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 3TCF (0-2)
  • Chain 'M':
    Compound: Endogenous peptide
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 3TCF (0-2)
  • Chain 'N':
    Compound: Endogenous peptide
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 3TCF (0-2)
  • Chain 'O':
    Compound: Endogenous peptide
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 3TCF (0-2)
  • Chain 'P':
    Compound: Endogenous peptide
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • PDB 3TCF (0-2)
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3tcfA (A:)
madvpagvtlaekqtlvrnngsevqsldphkiegvpesnisrdlfegllvsdldghpapg
vaeswdnkdakvwtfhlrkdakwsdgtpvtaqdfvyswqrsvdpntaspyasylqyghia
gideilegkkpitdlgvkaiddhtlevtlsepvpyfykllvhpstspvpkaaiekfgekw
tqpgnivtngaytlkdwvvnerivlersptywnnaktvinqvtylpiasevtdvnryrsg
eidmtnnsmpielfqklkkeipdevhvdpylctyyyeinnqkppfndvrvrtalklgmdr
diivnkvkaqgnmpaygytppytdgakltqpewfgwsqekrneeakkllaeagytadkpl
tinllyntsdlhkklaiaasslwkknigvnvklvnqewktfldtrhqgtfdvaragwcad
yneptsflntmlsnssmntahykspafdsimaetlkvtdeaqrtalytkaeqqldkdsai
vpvyyyvnarlvkpwvggytgkdpldntytrnmyivkhhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3tcfA (A:)
advpagvtlaekqtlvrnngsevqsldphkiegvpesnisrdlfegllvsdldghpapgv
aeswdnkdakvwtfhlrkdakwsdgtpvtaqdfvyswqrsvdpntaspyasylqyghiag
ideilegkkpitdlgvkaiddhtlevtlsepvpyfykllvhpstspvpkaaiekfgekwt
qpgnivtngaytlkdwvvnerivlersptywnnaktvinqvtylpiasevtdvnryrsge
idmtnnsmpielfqklkkeipdevhvdpylctyyyeinnqkppfndvrvrtalklgmdrd
iivnkvkaqgnmpaygytppytdgakltqpewfgwsqekrneeakkllaeagytadkplt
inllyntsdlhkklaiaasslwkknigvnvklvnqewktfldtrhqgtfdvaragwcady
neptsflntmlsnssmntahykspafdsimaetlkvtdeaqrtalytkaeqqldkdsaiv
pvyyyvnarlvkpwvggytgkdpldntytrnmyivkh

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3tcfB (B:)
madvpagvtlaekqtlvrnngsevqsldphkiegvpesnisrdlfegllvsdldghpapg
vaeswdnkdakvwtfhlrkdakwsdgtpvtaqdfvyswqrsvdpntaspyasylqyghia
gideilegkkpitdlgvkaiddhtlevtlsepvpyfykllvhpstspvpkaaiekfgekw
tqpgnivtngaytlkdwvvnerivlersptywnnaktvinqvtylpiasevtdvnryrsg
eidmtnnsmpielfqklkkeipdevhvdpylctyyyeinnqkppfndvrvrtalklgmdr
diivnkvkaqgnmpaygytppytdgakltqpewfgwsqekrneeakkllaeagytadkpl
tinllyntsdlhkklaiaasslwkknigvnvklvnqewktfldtrhqgtfdvaragwcad
yneptsflntmlsnssmntahykspafdsimaetlkvtdeaqrtalytkaeqqldkdsai
vpvyyyvnarlvkpwvggytgkdpldntytrnmyivkhhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3tcfB (B:)
advpagvtlaekqtlvrnngsevqsldphkiegvpesnisrdlfegllvsdldghpapgv
aeswdnkdakvwtfhlrkdakwsdgtpvtaqdfvyswqrsvdpntaspyasylqyghiag
ideilegkkpitdlgvkaiddhtlevtlsepvpyfykllvhpstspvpkaaiekfgekwt
qpgnivtngaytlkdwvvnerivlersptywnnaktvinqvtylpiasevtdvnryrsge
idmtnnsmpielfqklkkeipdevhvdpylctyyyeinnqkppfndvrvrtalklgmdrd
iivnkvkaqgnmpaygytppytdgakltqpewfgwsqekrneeakkllaeagytadkplt
inllyntsdlhkklaiaasslwkknigvnvklvnqewktfldtrhqgtfdvaragwcady
neptsflntmlsnssmntahykspafdsimaetlkvtdeaqrtalytkaeqqldkdsaiv
pvyyyvnarlvkpwvggytgkdpldntytrnmyivkh

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3tcfC (C:)
madvpagvtlaekqtlvrnngsevqsldphkiegvpesnisrdlfegllvsdldghpapg
vaeswdnkdakvwtfhlrkdakwsdgtpvtaqdfvyswqrsvdpntaspyasylqyghia
gideilegkkpitdlgvkaiddhtlevtlsepvpyfykllvhpstspvpkaaiekfgekw
tqpgnivtngaytlkdwvvnerivlersptywnnaktvinqvtylpiasevtdvnryrsg
eidmtnnsmpielfqklkkeipdevhvdpylctyyyeinnqkppfndvrvrtalklgmdr
diivnkvkaqgnmpaygytppytdgakltqpewfgwsqekrneeakkllaeagytadkpl
tinllyntsdlhkklaiaasslwkknigvnvklvnqewktfldtrhqgtfdvaragwcad
yneptsflntmlsnssmntahykspafdsimaetlkvtdeaqrtalytkaeqqldkdsai
vpvyyyvnarlvkpwvggytgkdpldntytrnmyivkhhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3tcfC (C:)
advpagvtlaekqtlvrnngsevqsldphkiegvpesnisrdlfegllvsdldghpapgv
aeswdnkdakvwtfhlrkdakwsdgtpvtaqdfvyswqrsvdpntaspyasylqyghiag
ideilegkkpitdlgvkaiddhtlevtlsepvpyfykllvhpstspvpkaaiekfgekwt
qpgnivtngaytlkdwvvnerivlersptywnnaktvinqvtylpiasevtdvnryrsge
idmtnnsmpielfqklkkeipdevhvdpylctyyyeinnqkppfndvrvrtalklgmdrd
iivnkvkaqgnmpaygytppytdgakltqpewfgwsqekrneeakkllaeagytadkplt
inllyntsdlhkklaiaasslwkknigvnvklvnqewktfldtrhqgtfdvaragwcady
neptsflntmlsnssmntahykspafdsimaetlkvtdeaqrtalytkaeqqldkdsaiv
pvyyyvnarlvkpwvggytgkdpldntytrnmyivkh

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3tcfD (D:)
madvpagvtlaekqtlvrnngsevqsldphkiegvpesnisrdlfegllvsdldghpapg
vaeswdnkdakvwtfhlrkdakwsdgtpvtaqdfvyswqrsvdpntaspyasylqyghia
gideilegkkpitdlgvkaiddhtlevtlsepvpyfykllvhpstspvpkaaiekfgekw
tqpgnivtngaytlkdwvvnerivlersptywnnaktvinqvtylpiasevtdvnryrsg
eidmtnnsmpielfqklkkeipdevhvdpylctyyyeinnqkppfndvrvrtalklgmdr
diivnkvkaqgnmpaygytppytdgakltqpewfgwsqekrneeakkllaeagytadkpl
tinllyntsdlhkklaiaasslwkknigvnvklvnqewktfldtrhqgtfdvaragwcad
yneptsflntmlsnssmntahykspafdsimaetlkvtdeaqrtalytkaeqqldkdsai
vpvyyyvnarlvkpwvggytgkdpldntytrnmyivkhhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3tcfD (D:)
advpagvtlaekqtlvrnngsevqsldphkiegvpesnisrdlfegllvsdldghpapgv
aeswdnkdakvwtfhlrkdakwsdgtpvtaqdfvyswqrsvdpntaspyasylqyghiag
ideilegkkpitdlgvkaiddhtlevtlsepvpyfykllvhpstspvpkaaiekfgekwt
qpgnivtngaytlkdwvvnerivlersptywnnaktvinqvtylpiasevtdvnryrsge
idmtnnsmpielfqklkkeipdevhvdpylctyyyeinnqkppfndvrvrtalklgmdrd
iivnkvkaqgnmpaygytppytdgakltqpewfgwsqekrneeakkllaeagytadkplt
inllyntsdlhkklaiaasslwkknigvnvklvnqewktfldtrhqgtfdvaragwcady
neptsflntmlsnssmntahykspafdsimaetlkvtdeaqrtalytkaeqqldkdsaiv
pvyyyvnarlvkpwvggytgkdpldntytrnmyivkh

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3tcfE (E:)
madvpagvtlaekqtlvrnngsevqsldphkiegvpesnisrdlfegllvsdldghpapg
vaeswdnkdakvwtfhlrkdakwsdgtpvtaqdfvyswqrsvdpntaspyasylqyghia
gideilegkkpitdlgvkaiddhtlevtlsepvpyfykllvhpstspvpkaaiekfgekw
tqpgnivtngaytlkdwvvnerivlersptywnnaktvinqvtylpiasevtdvnryrsg
eidmtnnsmpielfqklkkeipdevhvdpylctyyyeinnqkppfndvrvrtalklgmdr
diivnkvkaqgnmpaygytppytdgakltqpewfgwsqekrneeakkllaeagytadkpl
tinllyntsdlhkklaiaasslwkknigvnvklvnqewktfldtrhqgtfdvaragwcad
yneptsflntmlsnssmntahykspafdsimaetlkvtdeaqrtalytkaeqqldkdsai
vpvyyyvnarlvkpwvggytgkdpldntytrnmyivkhhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3tcfE (E:)
advpagvtlaekqtlvrnngsevqsldphkiegvpesnisrdlfegllvsdldghpapgv
aeswdnkdakvwtfhlrkdakwsdgtpvtaqdfvyswqrsvdpntaspyasylqyghiag
ideilegkkpitdlgvkaiddhtlevtlsepvpyfykllvhpstspvpkaaiekfgekwt
qpgnivtngaytlkdwvvnerivlersptywnnaktvinqvtylpiasevtdvnryrsge
idmtnnsmpielfqklkkeipdevhvdpylctyyyeinnqkppfndvrvrtalklgmdrd
iivnkvkaqgnmpaygytppytdgakltqpewfgwsqekrneeakkllaeagytadkplt
inllyntsdlhkklaiaasslwkknigvnvklvnqewktfldtrhqgtfdvaragwcady
neptsflntmlsnssmntahykspafdsimaetlkvtdeaqrtalytkaeqqldkdsaiv
pvyyyvnarlvkpwvggytgkdpldntytrnmyivkh

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3tcfF (F:)
madvpagvtlaekqtlvrnngsevqsldphkiegvpesnisrdlfegllvsdldghpapg
vaeswdnkdakvwtfhlrkdakwsdgtpvtaqdfvyswqrsvdpntaspyasylqyghia
gideilegkkpitdlgvkaiddhtlevtlsepvpyfykllvhpstspvpkaaiekfgekw
tqpgnivtngaytlkdwvvnerivlersptywnnaktvinqvtylpiasevtdvnryrsg
eidmtnnsmpielfqklkkeipdevhvdpylctyyyeinnqkppfndvrvrtalklgmdr
diivnkvkaqgnmpaygytppytdgakltqpewfgwsqekrneeakkllaeagytadkpl
tinllyntsdlhkklaiaasslwkknigvnvklvnqewktfldtrhqgtfdvaragwcad
yneptsflntmlsnssmntahykspafdsimaetlkvtdeaqrtalytkaeqqldkdsai
vpvyyyvnarlvkpwvggytgkdpldntytrnmyivkhhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3tcfF (F:)
advpagvtlaekqtlvrnngsevqsldphkiegvpesnisrdlfegllvsdldghpapgv
aeswdnkdakvwtfhlrkdakwsdgtpvtaqdfvyswqrsvdpntaspyasylqyghiag
ideilegkkpitdlgvkaiddhtlevtlsepvpyfykllvhpstspvpkaaiekfgekwt
qpgnivtngaytlkdwvvnerivlersptywnnaktvinqvtylpiasevtdvnryrsge
idmtnnsmpielfqklkkeipdevhvdpylctyyyeinnqkppfndvrvrtalklgmdrd
iivnkvkaqgnmpaygytppytdgakltqpewfgwsqekrneeakkllaeagytadkplt
inllyntsdlhkklaiaasslwkknigvnvklvnqewktfldtrhqgtfdvaragwcady
neptsflntmlsnssmntahykspafdsimaetlkvtdeaqrtalytkaeqqldkdsaiv
pvyyyvnarlvkpwvggytgkdpldntytrnmyivkh

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3tcfG (G:)
madvpagvtlaekqtlvrnngsevqsldphkiegvpesnisrdlfegllvsdldghpapg
vaeswdnkdakvwtfhlrkdakwsdgtpvtaqdfvyswqrsvdpntaspyasylqyghia
gideilegkkpitdlgvkaiddhtlevtlsepvpyfykllvhpstspvpkaaiekfgekw
tqpgnivtngaytlkdwvvnerivlersptywnnaktvinqvtylpiasevtdvnryrsg
eidmtnnsmpielfqklkkeipdevhvdpylctyyyeinnqkppfndvrvrtalklgmdr
diivnkvkaqgnmpaygytppytdgakltqpewfgwsqekrneeakkllaeagytadkpl
tinllyntsdlhkklaiaasslwkknigvnvklvnqewktfldtrhqgtfdvaragwcad
yneptsflntmlsnssmntahykspafdsimaetlkvtdeaqrtalytkaeqqldkdsai
vpvyyyvnarlvkpwvggytgkdpldntytrnmyivkhhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3tcfG (G:)
advpagvtlaekqtlvrnngsevqsldphkiegvpesnisrdlfegllvsdldghpapgv
aeswdnkdakvwtfhlrkdakwsdgtpvtaqdfvyswqrsvdpntaspyasylqyghiag
ideilegkkpitdlgvkaiddhtlevtlsepvpyfykllvhpstspvpkaaiekfgekwt
qpgnivtngaytlkdwvvnerivlersptywnnaktvinqvtylpiasevtdvnryrsge
idmtnnsmpielfqklkkeipdevhvdpylctyyyeinnqkppfndvrvrtalklgmdrd
iivnkvkaqgnmpaygytppytdgakltqpewfgwsqekrneeakkllaeagytadkplt
inllyntsdlhkklaiaasslwkknigvnvklvnqewktfldtrhqgtfdvaragwcady
neptsflntmlsnssmntahykspafdsimaetlkvtdeaqrtalytkaeqqldkdsaiv
pvyyyvnarlvkpwvggytgkdpldntytrnmyivkh

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >3tcfH (H:)
madvpagvtlaekqtlvrnngsevqsldphkiegvpesnisrdlfegllvsdldghpapg
vaeswdnkdakvwtfhlrkdakwsdgtpvtaqdfvyswqrsvdpntaspyasylqyghia
gideilegkkpitdlgvkaiddhtlevtlsepvpyfykllvhpstspvpkaaiekfgekw
tqpgnivtngaytlkdwvvnerivlersptywnnaktvinqvtylpiasevtdvnryrsg
eidmtnnsmpielfqklkkeipdevhvdpylctyyyeinnqkppfndvrvrtalklgmdr
diivnkvkaqgnmpaygytppytdgakltqpewfgwsqekrneeakkllaeagytadkpl
tinllyntsdlhkklaiaasslwkknigvnvklvnqewktfldtrhqgtfdvaragwcad
yneptsflntmlsnssmntahykspafdsimaetlkvtdeaqrtalytkaeqqldkdsai
vpvyyyvnarlvkpwvggytgkdpldntytrnmyivkhhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3tcfH (H:)
advpagvtlaekqtlvrnngsevqsldphkiegvpesnisrdlfegllvsdldghpapgv
aeswdnkdakvwtfhlrkdakwsdgtpvtaqdfvyswqrsvdpntaspyasylqyghiag
ideilegkkpitdlgvkaiddhtlevtlsepvpyfykllvhpstspvpkaaiekfgekwt
qpgnivtngaytlkdwvvnerivlersptywnnaktvinqvtylpiasevtdvnryrsge
idmtnnsmpielfqklkkeipdevhvdpylctyyyeinnqkppfndvrvrtalklgmdrd
iivnkvkaqgnmpaygytppytdgakltqpewfgwsqekrneeakkllaeagytadkplt
inllyntsdlhkklaiaasslwkknigvnvklvnqewktfldtrhqgtfdvaragwcady
neptsflntmlsnssmntahykspafdsimaetlkvtdeaqrtalytkaeqqldkdsaiv
pvyyyvnarlvkpwvggytgkdpldntytrnmyivkh

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    No sequence available.

  • Chain 'M':
    No sequence available.

  • Chain 'N':
    No sequence available.

  • Chain 'O':
    No sequence available.

  • Chain 'P':
    No sequence available.