PDB entry 3qwd

View 3qwd on RCSB PDB site
Description: Crystal structure of ClpP from Staphylococcus aureus
Class: Hydrolase
Keywords: caseinolytic protease, ClpP, serin-protease, Hydrolase
Deposited on 2011-02-28, released 2011-05-18
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-07-08.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.209
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Staphylococcus aureus subsp. aureus NCTC 8325 [TaxId:93061]
    Gene: clpP, SAOUHSC_00790
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3qwda_
  • Chain 'B':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Staphylococcus aureus subsp. aureus NCTC 8325 [TaxId:93061]
    Gene: clpP, SAOUHSC_00790
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3qwdb_
  • Chain 'C':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Staphylococcus aureus subsp. aureus NCTC 8325 [TaxId:93061]
    Gene: clpP, SAOUHSC_00790
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2G036 (Start-194)
      • expression tag (195-196)
    Domains in SCOPe 2.07: d3qwdc1, d3qwdc2
  • Chain 'D':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Staphylococcus aureus subsp. aureus NCTC 8325 [TaxId:93061]
    Gene: clpP, SAOUHSC_00790
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3qwdd_
  • Chain 'E':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Staphylococcus aureus subsp. aureus NCTC 8325 [TaxId:93061]
    Gene: clpP, SAOUHSC_00790
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3qwde_
  • Chain 'F':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Staphylococcus aureus subsp. aureus NCTC 8325 [TaxId:93061]
    Gene: clpP, SAOUHSC_00790
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3qwdf_
  • Chain 'G':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Staphylococcus aureus subsp. aureus NCTC 8325 [TaxId:93061]
    Gene: clpP, SAOUHSC_00790
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3qwdg_
  • Chain 'H':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Staphylococcus aureus subsp. aureus NCTC 8325 [TaxId:93061]
    Gene: clpP, SAOUHSC_00790
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2G036 (Start-194)
      • expression tag (195-201)
    Domains in SCOPe 2.07: d3qwdh1, d3qwdh2
  • Chain 'I':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Staphylococcus aureus subsp. aureus NCTC 8325 [TaxId:93061]
    Gene: clpP, SAOUHSC_00790
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2G036 (Start-194)
      • expression tag (195-196)
    Domains in SCOPe 2.07: d3qwdi1, d3qwdi2
  • Chain 'J':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Staphylococcus aureus subsp. aureus NCTC 8325 [TaxId:93061]
    Gene: clpP, SAOUHSC_00790
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3qwdj_
  • Chain 'K':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Staphylococcus aureus subsp. aureus NCTC 8325 [TaxId:93061]
    Gene: clpP, SAOUHSC_00790
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3qwdk_
  • Chain 'L':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Staphylococcus aureus subsp. aureus NCTC 8325 [TaxId:93061]
    Gene: clpP, SAOUHSC_00790
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3qwdl_
  • Chain 'M':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Staphylococcus aureus subsp. aureus NCTC 8325 [TaxId:93061]
    Gene: clpP, SAOUHSC_00790
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3qwdm_
  • Chain 'N':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Staphylococcus aureus subsp. aureus NCTC 8325 [TaxId:93061]
    Gene: clpP, SAOUHSC_00790
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3qwdn_
  • Heterogens: CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3qwdA (A:)
mnliptviettnrgeraydiysrllkdriimlgsqiddnvansivsqllflqaqdsekdi
ylyinspggsvtagfaiydtiqhikpdvqticigmaasmgsfllaagakgkrfalpnaev
mihqplggaqgqateieiaanhilktreklnrilsertgqsiekiqkdtdrdnfltaeea
keyglidevmvpetkwshpqfek

    Sequence, based on observed residues (ATOM records): (download) 
    >3qwdA (A:)
liptvietraydiysrllkdriimlgsqiddnvansivsqllflqaqdsekdiylyinsp
ggsvtagfaiydtiqhikpdvqticigmaasmgsfllaagakgkrfalpnaevmihqplg
gaqgqateieiaanhilktreklnrilsertgqsiekiqkdtdrdnfltaeeakeyglid
evmvpet

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3qwdB (B:)
mnliptviettnrgeraydiysrllkdriimlgsqiddnvansivsqllflqaqdsekdi
ylyinspggsvtagfaiydtiqhikpdvqticigmaasmgsfllaagakgkrfalpnaev
mihqplggaqgqateieiaanhilktreklnrilsertgqsiekiqkdtdrdnfltaeea
keyglidevmvpetkwshpqfek

    Sequence, based on observed residues (ATOM records): (download) 
    >3qwdB (B:)
liptvieteraydiysrllkdriimlgsqiddnvansivsqllflqaqdsekdiylyins
pggsvtagfaiydtiqhikpdvqticigmaasmgsfllaagakgkrfalpnaevmihqpl
ggqgqateieiaanhilktreklnrilsertgqsiekiqkdtdrdnfltaeeakeyglid
evmvpet

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3qwdC (C:)
mnliptviettnrgeraydiysrllkdriimlgsqiddnvansivsqllflqaqdsekdi
ylyinspggsvtagfaiydtiqhikpdvqticigmaasmgsfllaagakgkrfalpnaev
mihqplggaqgqateieiaanhilktreklnrilsertgqsiekiqkdtdrdnfltaeea
keyglidevmvpetkwshpqfek

    Sequence, based on observed residues (ATOM records): (download) 
    >3qwdC (C:)
liptvieraydiysrllkdriimlgsqiddnvansivsqllflqaqdsekdiylyinspg
gsvtagfaiydtiqhikpdvqticigmaasmgsfllaagakgkrfalpnaevmihqplgg
qateieiaanhilktreklnrilsertgqsiekiqkdtdrdnfltaeeakeyglidevmv
petkws

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3qwdD (D:)
mnliptviettnrgeraydiysrllkdriimlgsqiddnvansivsqllflqaqdsekdi
ylyinspggsvtagfaiydtiqhikpdvqticigmaasmgsfllaagakgkrfalpnaev
mihqplggaqgqateieiaanhilktreklnrilsertgqsiekiqkdtdrdnfltaeea
keyglidevmvpetkwshpqfek

    Sequence, based on observed residues (ATOM records): (download) 
    >3qwdD (D:)
liptvieraydiysrllkdriimlgsqiddnvansivsqllflqaqdsekdiylyinspg
gsvtagfaiydtiqhikpdvqticigmaasmgsfllaagakgkrfalpnaevmihqplgg
gqateieiaanhilktreklnrilsertgqsiekiqkdtdrdnfltaeeakeyglidevm
vp

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3qwdE (E:)
mnliptviettnrgeraydiysrllkdriimlgsqiddnvansivsqllflqaqdsekdi
ylyinspggsvtagfaiydtiqhikpdvqticigmaasmgsfllaagakgkrfalpnaev
mihqplggaqgqateieiaanhilktreklnrilsertgqsiekiqkdtdrdnfltaeea
keyglidevmvpetkwshpqfek

    Sequence, based on observed residues (ATOM records): (download) 
    >3qwdE (E:)
liptvieeraydiysrllkdriimlgsqiddnvansivsqllflqaqdsekdiylyinsp
ggsvtagfaiydtiqhikpdvqticigmaasmgsfllaagakgkrfalpnaevmihqplg
gaqgqateieiaanhilktreklnrilsertgqsiekiqkdtdrdnfltaeeakeyglid
evmvpetk

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3qwdF (F:)
mnliptviettnrgeraydiysrllkdriimlgsqiddnvansivsqllflqaqdsekdi
ylyinspggsvtagfaiydtiqhikpdvqticigmaasmgsfllaagakgkrfalpnaev
mihqplggaqgqateieiaanhilktreklnrilsertgqsiekiqkdtdrdnfltaeea
keyglidevmvpetkwshpqfek

    Sequence, based on observed residues (ATOM records): (download) 
    >3qwdF (F:)
iptvieydiysrllkdriimlgsqiddnvansivsqllflqaqdsekdiylyinspggsv
tagfaiydtiqhikpdvqticigmaasmgsfllaagakgkrfalpnaevmihqplggaqg
qateieiaanhilktreklnrilsertgqsiekiqkdtdrdnfltaeeakeyglidevmv
pe

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3qwdG (G:)
mnliptviettnrgeraydiysrllkdriimlgsqiddnvansivsqllflqaqdsekdi
ylyinspggsvtagfaiydtiqhikpdvqticigmaasmgsfllaagakgkrfalpnaev
mihqplggaqgqateieiaanhilktreklnrilsertgqsiekiqkdtdrdnfltaeea
keyglidevmvpetkwshpqfek

    Sequence, based on observed residues (ATOM records): (download) 
    >3qwdG (G:)
liptvietaydiysrllkdriimlgsqiddnvansivsqllflqaqdsekdiylyinspg
gsvtagfaiydtiqhikpdvqticigmaasmgsfllaagakgkrfalpnaevmihqplgg
aqgqateieiaanhilktreklnrilsertgqsiekiqkdtdrdnfltaeeakeyglide
vmvpe

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >3qwdH (H:)
mnliptviettnrgeraydiysrllkdriimlgsqiddnvansivsqllflqaqdsekdi
ylyinspggsvtagfaiydtiqhikpdvqticigmaasmgsfllaagakgkrfalpnaev
mihqplggaqgqateieiaanhilktreklnrilsertgqsiekiqkdtdrdnfltaeea
keyglidevmvpetkwshpqfek

    Sequence, based on observed residues (ATOM records): (download) 
    >3qwdH (H:)
liptvieraydiysrllkdriimlgsqiddnvansivsqllflqaqdsekdiylyinspg
gsvtagfaiydtiqhikpdvqticigmaasmgsfllaagakgkrfalpnaevmihqplgq
gqateieiaanhilktreklnrilsertgqsiekiqkdtdrdnfltaeeakeyglidevm
vpetkwshpqfe

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >3qwdI (I:)
mnliptviettnrgeraydiysrllkdriimlgsqiddnvansivsqllflqaqdsekdi
ylyinspggsvtagfaiydtiqhikpdvqticigmaasmgsfllaagakgkrfalpnaev
mihqplggaqgqateieiaanhilktreklnrilsertgqsiekiqkdtdrdnfltaeea
keyglidevmvpetkwshpqfek

    Sequence, based on observed residues (ATOM records): (download) 
    >3qwdI (I:)
liptvieaydiysrllkdriimlgsqiddnvansivsqllflqaqdsekdiylyinspgg
svtagfaiydtiqhikpdvqticigmaasmgsfllaagakgkrfalpnaevmihqplggg
qateieiaanhilktreklnrilsertgqsiekiqkdtdrdnfltaeeakeyglidevmv
petkws

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >3qwdJ (J:)
mnliptviettnrgeraydiysrllkdriimlgsqiddnvansivsqllflqaqdsekdi
ylyinspggsvtagfaiydtiqhikpdvqticigmaasmgsfllaagakgkrfalpnaev
mihqplggaqgqateieiaanhilktreklnrilsertgqsiekiqkdtdrdnfltaeea
keyglidevmvpetkwshpqfek

    Sequence, based on observed residues (ATOM records): (download) 
    >3qwdJ (J:)
liptvieraydiysrllkdriimlgsqiddnvansivsqllflqaqdsekdiylyinspg
gsvtagfaiydtiqhikpdvqticigmaasmgsfllaagakgkrfalpnaevmihqplgg
aqgqateieiaanhilktreklnrilsertgqsiekiqkdtdrdnfltaeeakeyglide
vmvpet

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >3qwdK (K:)
mnliptviettnrgeraydiysrllkdriimlgsqiddnvansivsqllflqaqdsekdi
ylyinspggsvtagfaiydtiqhikpdvqticigmaasmgsfllaagakgkrfalpnaev
mihqplggaqgqateieiaanhilktreklnrilsertgqsiekiqkdtdrdnfltaeea
keyglidevmvpetkwshpqfek

    Sequence, based on observed residues (ATOM records): (download) 
    >3qwdK (K:)
liptvieydiysrllkdriimlgsqiddnvansivsqllflqaqdsekdiylyinspggs
vtagfaiydtiqhikpdvqticigmaasmgsfllaagakgkrfalpnaevmihqplgqat
eieiaanhilktreklnrilsertgqsiekiqkdtdrdnfltaeeakeyglidevmvpe

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >3qwdL (L:)
mnliptviettnrgeraydiysrllkdriimlgsqiddnvansivsqllflqaqdsekdi
ylyinspggsvtagfaiydtiqhikpdvqticigmaasmgsfllaagakgkrfalpnaev
mihqplggaqgqateieiaanhilktreklnrilsertgqsiekiqkdtdrdnfltaeea
keyglidevmvpetkwshpqfek

    Sequence, based on observed residues (ATOM records): (download) 
    >3qwdL (L:)
liptvieydiysrllkdriimlgsqiddnvansivsqllflqaqdsekdiylyinspggs
vtagfaiydtiqhikpdvqticigmaasmgsfllaagakgkrfalpnaevmihqplggqa
teieiaanhilktreklnrilsertgqsiekiqkdtdrdnfltaeeakeyglidevmvpe

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >3qwdM (M:)
mnliptviettnrgeraydiysrllkdriimlgsqiddnvansivsqllflqaqdsekdi
ylyinspggsvtagfaiydtiqhikpdvqticigmaasmgsfllaagakgkrfalpnaev
mihqplggaqgqateieiaanhilktreklnrilsertgqsiekiqkdtdrdnfltaeea
keyglidevmvpetkwshpqfek

    Sequence, based on observed residues (ATOM records): (download) 
    >3qwdM (M:)
liptvieraydiysrllkdriimlgsqiddnvansivsqllflqaqdsekdiylyinspg
gsvtagfaiydtiqhikpdvqticigmaasmgsfllaagakgkrfalpnaevmihqplgg
aqgqateieiaanhilktreklnrilsertgqsiekiqkdtdrdnfltaeeakeyglide
vmvpet

  • Chain 'N':
    Sequence, based on SEQRES records: (download) 
    >3qwdN (N:)
mnliptviettnrgeraydiysrllkdriimlgsqiddnvansivsqllflqaqdsekdi
ylyinspggsvtagfaiydtiqhikpdvqticigmaasmgsfllaagakgkrfalpnaev
mihqplggaqgqateieiaanhilktreklnrilsertgqsiekiqkdtdrdnfltaeea
keyglidevmvpetkwshpqfek

    Sequence, based on observed residues (ATOM records): (download) 
    >3qwdN (N:)
liptvieraydiysrllkdriimlgsqiddnvansivsqllflqaqdsekdiylyinspg
gsvtagfaiydtiqhikpdvqticigmaasmgsfllaagakgkrfalpnaevmihqplgg
aqateieiaanhilktreklnrilsertgqsiekiqkdtdrdnfltaeeakeyglidevm
vpe