PDB entry 3ngf

View 3ngf on RCSB PDB site
Description: Crystal structure of AP endonuclease, family 2 from Brucella melitensis
Class: isomerase
Keywords: Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID, TIM Barrel, AP Nuclease, ISOMERASE
Deposited on 2010-06-11, released 2010-07-07
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.143
AEROSPACI score: 0.56 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: AP endonuclease, family 2
    Species: Brucella melitensis biovar Abortus [TaxId:359391]
    Gene: BAB2_0144
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ngfa_
  • Chain 'B':
    Compound: AP endonuclease, family 2
    Species: Brucella melitensis biovar Abortus [TaxId:359391]
    Gene: BAB2_0144
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2YLA2 (8-End)
      • expression tag (6-7)
    Domains in SCOPe 2.07: d3ngfb1, d3ngfb2
  • Heterogens: MN, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3ngfA (A:)
mahhhhhhmprfaanlstmfnevpflerfrlaaeagfggveflfpydfdadviarelkqh
nltqvlfnmppgdwaagergmaaisgreqefrdnvdialhyalaldcrtlhamsgitegl
drkaceetfienfryaadklaphgitvlveplntrnmpgyfivhqleavglvkrvnrpnv
avqldlyhaqimdgdltrliekmngafshvqiasvpdrhepdegelnypylfsvlesvgy
rgwvgceynprgktesglawfapyrdqsa

    Sequence, based on observed residues (ATOM records): (download) 
    >3ngfA (A:)
mprfaanlstmfnevpflerfrlaaeagfggveflfpydfdadviarelkqhnltqvlfn
mppgdwaagergmaaisgreqefrdnvdialhyalaldcrtlhamsgitegldrkaceet
fienfryaadklaphgitvlveplntrnmpgyfivhqleavglvkrvnrpnvavqldlyh
aqimdgdltrliekmngafshvqiasvpdrhepdegelnypylfsvlesvgyrgwvgcey
nprgktesglawfapyrd

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3ngfB (B:)
mahhhhhhmprfaanlstmfnevpflerfrlaaeagfggveflfpydfdadviarelkqh
nltqvlfnmppgdwaagergmaaisgreqefrdnvdialhyalaldcrtlhamsgitegl
drkaceetfienfryaadklaphgitvlveplntrnmpgyfivhqleavglvkrvnrpnv
avqldlyhaqimdgdltrliekmngafshvqiasvpdrhepdegelnypylfsvlesvgy
rgwvgceynprgktesglawfapyrdqsa

    Sequence, based on observed residues (ATOM records): (download) 
    >3ngfB (B:)
hhmprfaanlstmfnevpflerfrlaaeagfggveflfpydfdadviarelkqhnltqvl
fnmppgdwaagergmaaisgreqefrdnvdialhyalaldcrtlhamsgitegldrkace
etfienfryaadklaphgitvlveplntrnmpgyfivhqleavglvkrvnrpnvavqldl
yhaqimdgdltrliekmngafshvqiasvpdrhepdegelnypylfsvlesvgyrgwvgc
eynprgktesglawfapyrd