PDB entry 3fds

View 3fds on RCSB PDB site
Description: Structural insight into recruitment of translesion DNA polymerase Dpo4 to sliding clamp PCNA
Class: transferase
Keywords: Protein-protein complex, DNA damage, DNA repair, DNA replication, DNA-binding, DNA-directed DNA polymerase, Magnesium, Metal-binding, Mutator protein, Nucleotidyltransferase, Transferase
Deposited on 2008-11-26, released 2009-01-20
The last revision prior to the SCOPe 2.04 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: 0.191
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase IV
    Species: Sulfolobus solfataricus [TaxId:2287]
    Gene: DBH, DPO4, SSO2448
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3fdsa1, d3fdsa2
  • Chain 'C':
    Compound: DNA polymerase sliding clamp b
    Species: Sulfolobus solfataricus [TaxId:2287]
    Gene: pcnB, pcnA-2, SSO0397, C41_008
    Database cross-references and differences (RAF-indexed):
    • Uniprot P57766 (0-248)
      • engineered (1)
  • Chain 'D':
    Compound: DNA polymerase sliding clamp c
    Species: Sulfolobus solfataricus [TaxId:2287]
    Gene: pcnC, pcnA-2, SSO1047
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q97Z84 (1-244)
      • initiating methionine (0)
    Domains in SCOPe 2.04: d3fdsd1, d3fdsd2
  • Heterogens: EDO, PEG, 1PE, GOL, PGE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3fdsA (A:)
mivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagip
iveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyre
aynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldi
advpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr
vrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgr
tfphgisketaysesvkllqkileederkirrigvrfskfieaigldkffdt

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3fdsD (D:)
mmkakvidavsfsyilrtvgdflseanfivtkegirvsgidpsrvvfldiflpssyfegf
evsqekeiigfkledvndilkrvlkddtlilssneskltltfdgeftrsfelpliqvest
qppsvnlefpfkaqlltitfadiidelsdlgevlnihskenklyfevigdlstakvelst
dngtlleasgadvsssygmeyvanttkmrrasdsmelyfgsqiplklrfklpqegygdfy
iapra

    Sequence, based on observed residues (ATOM records): (download) 
    >3fdsD (D:)
mmkakvidavsfsyilrtvgdflseanfivtkegirvsgidpsrvvfldiflpssyfegf
evsqekeiigfkledvndilkrvlkddtlilssneskltltfdgeftrsfelpliqvest
qplefpfkaqlltitfadiidelsdlgevlnihskenklyfevigdlstakvelstdngt
lleasgadvsssygmeyvanttkmrrasdsmelyfgsqiplklrfklpqegygdfyiapr
a