SCOPe 2.04: Domain d3fdsd1: 3fds D:1-127

Lineage for d3fdsd1 (3fds D:1-127)

1. Root: SCOPe 2.04

2. Class d: Alpha and beta proteins (a+b) [53931] (380 folds)

3. Fold d.131: DNA clamp [55978] (1 superfamily)
   contains two helices and two beta sheets
   duplication: fold has internal pseudo two-fold symmetry

4. Superfamily d.131.1: DNA clamp [55979] (3 families)

5. Family d.131.1.0: automated matches [227185] (1 protein)
   not a true family

6. Protein automated matches [226907] (12 species)
   not a true protein

7. Species Sulfolobus solfataricus [TaxId:2287] [225132] (4 PDB entries)

8. Domain d3fdsd1: 3fds D:1-127 [209862]
   Other proteins in same PDB: d3fdsa1, d3fdsa2
   automated match to d1ud9a1
   protein/DNA complex; complexed with 1pe, edo, gol, peg, pge

Details for d3fdsd1

PDB Entry: 3fds, 2.05 Å

PDB Description: structural insight into recruitment of translesion dna polymerase dpo4 to sliding clamp pcna

PDB Compounds: (D:) DNA polymerase sliding clamp c

SCOPe Domain Sequences for d3fdsd1:

Sequence, based on SEQRES records:

>d3fdsd1 d.131.1.0 (D:1-127) automated matches {Sulfolobus solfataricus [TaxId: 2287]}
mmkakvidavsfsyilrtvgdflseanfivtkegirvsgidpsrvvfldiflpssyfegf
evsqekeiigfkledvndilkrvlkddtlilssneskltltfdgeftrsfelpliqvest
qppsvnl

Sequence, based on observed residues (ATOM records):

>d3fdsd1 d.131.1.0 (D:1-127) automated matches {Sulfolobus solfataricus [TaxId: 2287]}
mmkakvidavsfsyilrtvgdflseanfivtkegirvsgidpsrvvfldiflpssyfegf
evsqekeiigfkledvndilkrvlkddtlilssneskltltfdgeftrsfelpliqvest
qpl

Timeline for d3fdsd1:

• d3fdsd1 first appeared in SCOPe 2.03
  
• d3fdsd1 appears in SCOPe 2.05
  
• d3fdsd1 appears in the current release, SCOPe 2.08