PDB entry 2vl3
View 2vl3 on RCSB PDB site
Description: oxidized and reduced forms of human peroxiredoxin 5
Class: oxidoreductase
Keywords: thioredoxin peroxidase, alternative initiation, antioxidant enzyme, redox-active center, cytoplasm, peroxidase, peroxisome, antioxidant, polymorphism, mitochondrion, peroxiredoxin, oxidoreductase, transit peptide, thioredoxin fold
Deposited on
2008-01-08, released
2008-08-26
The last revision prior to the SCOPe 2.02 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 1.83 Å
R-factor: 0.238
AEROSPACI score: 0.43
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: peroxiredoxin-5
Species: HOMO SAPIENS [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 2VL3 (Start-10)
- Uniprot P30044 (11-171)
Domains in SCOPe 2.02: d2vl3a_ - Chain 'B':
Compound: peroxiredoxin-5
Species: HOMO SAPIENS [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 2VL3
- Uniprot P30044 (11-171)
Domains in SCOPe 2.02: d2vl3b_ - Chain 'C':
Compound: peroxiredoxin-5
Species: HOMO SAPIENS [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 2VL3
- Uniprot P30044 (11-171)
Domains in SCOPe 2.02: d2vl3c_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2vl3A (A:)
rgshhhhhhgsapikvgdaipavevfegepgnkvnlaelfkgkkgvlfgvpgaftpgcsk
thlpgfveqaealkakgvqvvaclsvndafvtgewgrahkaegkvrlladptgafgketd
lllddslvsifgnrrlkrfsmvvqdgivkalnvepdgtgltcslapniisql
Sequence, based on observed residues (ATOM records): (download)
>2vl3A (A:)
sapikvgdaipavevfegepgnkvnlaelfkgkkgvlfgvpgaftpgcskthlpgfveqa
ealkakgvqvvaclsvndafvtgewgrahkaegkvrlladptgafgketdlllddslvsi
fgnrrlkrfsmvvqdgivkalnvepdgtgltcslapniisql
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2vl3B (B:)
rgshhhhhhgsapikvgdaipavevfegepgnkvnlaelfkgkkgvlfgvpgaftpgcsk
thlpgfveqaealkakgvqvvaclsvndafvtgewgrahkaegkvrlladptgafgketd
lllddslvsifgnrrlkrfsmvvqdgivkalnvepdgtgltcslapniisql
Sequence, based on observed residues (ATOM records): (download)
>2vl3B (B:)
apikvgdaipavevfegepgnkvnlaelfkgkkgvlfgvpgaftpgcskthlpgfveqae
alkakgvqvvaclsvndafvtgewgrahkaegkvrlladptgafgketdlllddslvsif
gnrrlkrfsmvvqdgivkalnvepdgtgltcslapniisql
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2vl3C (C:)
rgshhhhhhgsapikvgdaipavevfegepgnkvnlaelfkgkkgvlfgvpgaftpgcsk
thlpgfveqaealkakgvqvvaclsvndafvtgewgrahkaegkvrlladptgafgketd
lllddslvsifgnrrlkrfsmvvqdgivkalnvepdgtgltcslapniisql
Sequence, based on observed residues (ATOM records): (download)
>2vl3C (C:)
apikvgdaipavevfegepgnkvnlaelfkgkkgvlfgvpgaftpgcskthlpgfveqae
alkakgvqvvaclsvndafvtgewgrahkaegkvrlladptgafgketdlllddslvsif
gnrrlkrfsmvvqdgivkalnvepdgtgltcslapniisql