PDB entry 2v4r

View 2v4r on RCSB PDB site
Description: non-productive complex of the y-family DNA polymerase dpo4 with dgtp skipping the m1dg adduct to pair with the next template cytosine
Class: transferase
Keywords: DNA-directed DNA polymerase, DNA-binding, metal-binding, DNA replication, mutator protein, nucleotidyltransferase, DNA adduct, DNA damage, DNA repair, transferase, dpo4, m1dg, magnesium
Deposited on 2008-09-26, released 2009-06-16
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-06-01, with a file datestamp of 2011-05-27.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.218
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase IV
    Species: SULFOLOBUS SOLFATARICUS [TaxId:273057]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q97W02 (6-End)
      • expression tag (5)
    Domains in SCOPe 2.07: d2v4ra1, d2v4ra2, d2v4ra3
  • Chain 'P':
    Compound: 5'-d(*gp*gp*gp*gp*gp*ap*ap*gp*gp*ap*tp*tp*c)-3'
  • Chain 'T':
    Compound: 5'-d(*tp*cp*ap*cp*m1gp*gp*ap*ap*tp*cp*cp *tp*tp*cp*cp*cp*cp*c)-3'
  • Heterogens: DGT, CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2v4rA (A:)
hhhhhhmivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfg
vkagipiveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdk
vrdyreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrl
ireldiadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeyn
epirtrvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedld
ivsrgrtfphgisketaysesvkllqkileederkirrigvrfskfieaigldkffdt

    Sequence, based on observed residues (ATOM records): (download) 
    >2v4rA (A:)
hmivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagi
piveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyr
eaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireld
iadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirt
rvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrg
rtfphgisketaysesvkllqkileederkirrigvrfskfie

  • Chain 'P':
    No sequence available.

  • Chain 'T':
    No sequence available.