PDB entry 2qrd

View 2qrd on RCSB PDB site
Description: Crystal Structure of the Adenylate Sensor from AMP-activated Protein Kinase in complex with ADP and ATP
Class: transferase
Keywords: AMPK, ADP, ATP-binding, Kinase, Nucleotide-binding, Serine/threonine-protein kinase, Transferase, CBS domain
Deposited on 2007-07-28, released 2007-10-23
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.41 Å
R-factor: 0.192
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: SNF1-like protein kinase ssp2
    Species: Schizosaccharomyces pombe [TaxId:4896]
    Gene: ssp2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2qrda_
  • Chain 'B':
    Compound: SPCC1919.03c protein
    Species: Schizosaccharomyces pombe [TaxId:4896]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2qrdb_
  • Chain 'C':
    Compound: SNF1-like protein kinase ssp2
    Species: Schizosaccharomyces pombe [TaxId:4896]
    Gene: ssp2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2qrdc_
  • Chain 'D':
    Compound: SPCC1919.03c protein
    Species: Schizosaccharomyces pombe [TaxId:4896]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2qrdd_
  • Chain 'E':
    Compound: Protein C1556.08c
    Species: Schizosaccharomyces pombe [TaxId:4896]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q10343 (2-333)
      • expression tag (1)
    Domains in SCOPe 2.08: d2qrde1, d2qrde2, d2qrde3
  • Chain 'G':
    Compound: Protein C1556.08c
    Species: Schizosaccharomyces pombe [TaxId:4896]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q10343 (2-333)
      • expression tag (0-1)
    Domains in SCOPe 2.08: d2qrdg1, d2qrdg2, d2qrdg3
  • Heterogens: ADP, ATP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2qrdA (A:)
sqstrkksrrnkwhfgvrcrgdapeillavyralqragaqftvpkpvngkyrsdmytiks
rweiphckregkntyayielqlyevmpgcfmldvksngykdiyshpertadhgmddlkss
fpfldlcamlvcklfsa

    Sequence, based on observed residues (ATOM records): (download) 
    >2qrdA (A:)
nkwhfgvrcrgdapeillavyralqragaqftvpkpvngkyrsdmytiksrweiphckre
gkntyayielqlyevmpgcfmldvksngykdiyskssfpfldlcamlvcklfsa

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2qrdB (B:)
mseseqysteipafltsntlqelklpkppslpphlekcilnsntaykedqsvlpnpnhvl
lnhlaaantqlgvlalsattryhrkyvttamfknfdv

    Sequence, based on observed residues (ATOM records): (download) 
    >2qrdB (B:)
seqysteipafltsnqelklpkppslpphlekcilnsntaykedqsvlpnpnhvllnhla
aantqlgvlalsattryhrkyvttamfknfd

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2qrdC (C:)
sqstrkksrrnkwhfgvrcrgdapeillavyralqragaqftvpkpvngkyrsdmytiks
rweiphckregkntyayielqlyevmpgcfmldvksngykdiyshpertadhgmddlkss
fpfldlcamlvcklfsa

    Sequence, based on observed residues (ATOM records): (download) 
    >2qrdC (C:)
nkwhfgvrcrgdapeillavyralqragaqftvpkpvngkyrsdmytiksrweiphckre
gkntyayielqlyevmpgcfmldvksngykdiylkssfpfldlcamlvcklfsa

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2qrdD (D:)
mseseqysteipafltsntlqelklpkppslpphlekcilnsntaykedqsvlpnpnhvl
lnhlaaantqlgvlalsattryhrkyvttamfknfdv

    Sequence, based on observed residues (ATOM records): (download) 
    >2qrdD (D:)
eqysteipafltsntlqelklpkppslpphlekcilnsntaykedqsvlpnpnhvllnhl
aaantqlgvlalsattryhrkyvttamfknfd

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2qrdE (E:)
amdvqetqkgalkeiqafirsrtsydvlptsfrlivfdvtlfvktslslltlnnivsapl
wdseankfaglltmadfvnvikyyyqsssfpeaiaeidkfrllglreverkigaippeti
yvhpmhslmdaclamsksrarriplidvdgetgsemivsvltqyrilkfismncketaml
rvplnqmtigtwsnlatasmetkvydvikmlaeknisavpivnsegtllnvyesvdvmhl
iqdgdysnldlsvgeallkrpanfdgvhtcratdrldgifdaikhsrvhrlfvvdenlkl
egilsladilnyiiydktttpgvpeqtdnfesav

    Sequence, based on observed residues (ATOM records): (download) 
    >2qrdE (E:)
mdvqetqkgalkeiqafirsrtsydvlptsfrlivfdvtlfvktslslltlnnivsaplw
dseankfaglltmadfvnvikyyyqsssfpeaiaeidkfrllglreverkigaippetiy
vhpmhslmdaclamsksrarriplidvdgetgsemivsvltqyrilkfismncketamlr
vplnqmtigtwsnlatasmetkvydvikmlaeknisavpivnsegtllnvyesvdvmhli
qdgdysnldlsvgeallkrpanfdgvhtcratdrldgifdaikhsrvhrlfvvdenlkle
gilsladilnyiiydktdnfesav

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >2qrdG (G:)
amdvqetqkgalkeiqafirsrtsydvlptsfrlivfdvtlfvktslslltlnnivsapl
wdseankfaglltmadfvnvikyyyqsssfpeaiaeidkfrllglreverkigaippeti
yvhpmhslmdaclamsksrarriplidvdgetgsemivsvltqyrilkfismncketaml
rvplnqmtigtwsnlatasmetkvydvikmlaeknisavpivnsegtllnvyesvdvmhl
iqdgdysnldlsvgeallkrpanfdgvhtcratdrldgifdaikhsrvhrlfvvdenlkl
egilsladilnyiiydktttpgvpeqtdnfesav

    Sequence, based on observed residues (ATOM records): (download) 
    >2qrdG (G:)
amdvqetqkgalkeiqafirsrtsydvlptsfrlivfdvtlfvktslslltlnnivsapl
wdseankfaglltmadfvnvikyyyqsssfpeaiaeidkfrllglreverkigaippeti
yvhpmhslmdaclamsksrarriplidvdgetgsemivsvltqyrilkfismncketaml
rvplnqmtigtwsnlatasmetkvydvikmlaeknisavpivnsegtllnvyesvdvmhl
iqdgdysnldlsvgeallkrpanfdgvhtcratdrldgifdaikhsrvhrlfvvdenlkl
egilsladilnyiiydktdnfesav