PDB entry 2pda

View 2pda on RCSB PDB site
Description: crystal structure of the complex between pyruvate-ferredoxin oxidoreductase from desulfovibrio africanus and pyruvate.
Class: oxidoreductase
Keywords: oxidoreductase, pyruvate catabolism, iron-sulfur cluster, tpp-dependent enzyme, complex
Deposited on 1998-11-10, released 1999-02-16
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.234
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protein (pyruvate-ferredoxin oxidoreductase)
    Species: Desulfovibrio africanus [TaxId:873]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2pdaa1, d2pdaa2, d2pdaa3, d2pdaa4, d2pdaa5
  • Chain 'B':
    Compound: protein (pyruvate-ferredoxin oxidoreductase)
    Species: Desulfovibrio africanus [TaxId:873]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2pdab1, d2pdab2, d2pdab3, d2pdab4, d2pdab5
  • Heterogens: MG, CA, SF4, TPP, PYR, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2pdaA (A:)
gkkmmttdgntatahvayamsevaaiypitpsstmgeeaddwaaqgrknifgqtltirem
qseagaagavhgalaagaltttftasqglllmipnmykisgellpgvfhvtaraiaahal
sifgdhqdiyaarqtgfamlasssvqeahdmalvahlaaiesnvpfmhffdgfrtsheiq
kievldyadmaslvnqkalaefraksmnpehphvrgtaqnpdiyfqgreaanpyylkvpg
ivaeymqkvasltgrsyklfdyvgapdaervivsmgsscetieevinhlaakgekiglik
vrlyrpfvseaffaalpasakvitvldrtkepgapgdplyldvcsafvergeampkilag
ryglgskefspamvksvydnmsgakknhftvgieddvtgtslpvdnafadttpkgtiqcq
fwglgadgtvgankqaikiigdntdlfaqgyfsydskksggitishlrfgekpiqstylv
nradyvachnpayvgiydilegikdggtfvlnspwssledmdkhlpsgikrtiankklkf
ynidavkiatdvglggrinmimqtaffklagvlpfekavdllkksihkaygkkgekivkm
ntdavdqavtslqefkypdswkdapaetkaepmtneffknvvkpiltqqgdklpvsafea
dgrfplgtsqfekrgvainvpqwvpenciqcnqcafvcphsailpvlakeeelvgapanf
taleakgkelkgykfriqintldcmgcgncadicppkekalvmqpldtqrdaqvpnleya
aripvksevlprdslkgsqfqeplmefsgacsgcgetpyvrvitqlfgermfianatgcs
siwgasapsmpyktnrlgqgpawgnslfedaaeygfgmnmsmfarrthladlaakalesd
asgdvkealqgwlagkndpikskeygdklkkllagqkdgllgqiaamsdlytkksvwifg
gdgwaydigyggldhvlasgedvnvfvmdtevysntggqsskatptgavakfaaagkrtg
kkdlarmvmtygyvyvatvsmgyskqqflkvlkeaesfpgpslviayatcinqglrkgmg
ksqdvmntavksgywplfrydprlaaqgknpfqldskapdgsveeflmaqnrfavldrsf
pedakrlraqvaheldvrfkelehmaatnifesfapaggkadgsvdfgegaefctrddtp
mmarpdsgeacdqnragtseqqgdlskrtkk

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2pdaB (B:)
gkkmmttdgntatahvayamsevaaiypitpsstmgeeaddwaaqgrknifgqtltirem
qseagaagavhgalaagaltttftasqglllmipnmykisgellpgvfhvtaraiaahal
sifgdhqdiyaarqtgfamlasssvqeahdmalvahlaaiesnvpfmhffdgfrtsheiq
kievldyadmaslvnqkalaefraksmnpehphvrgtaqnpdiyfqgreaanpyylkvpg
ivaeymqkvasltgrsyklfdyvgapdaervivsmgsscetieevinhlaakgekiglik
vrlyrpfvseaffaalpasakvitvldrtkepgapgdplyldvcsafvergeampkilag
ryglgskefspamvksvydnmsgakknhftvgieddvtgtslpvdnafadttpkgtiqcq
fwglgadgtvgankqaikiigdntdlfaqgyfsydskksggitishlrfgekpiqstylv
nradyvachnpayvgiydilegikdggtfvlnspwssledmdkhlpsgikrtiankklkf
ynidavkiatdvglggrinmimqtaffklagvlpfekavdllkksihkaygkkgekivkm
ntdavdqavtslqefkypdswkdapaetkaepmtneffknvvkpiltqqgdklpvsafea
dgrfplgtsqfekrgvainvpqwvpenciqcnqcafvcphsailpvlakeeelvgapanf
taleakgkelkgykfriqintldcmgcgncadicppkekalvmqpldtqrdaqvpnleya
aripvksevlprdslkgsqfqeplmefsgacsgcgetpyvrvitqlfgermfianatgcs
siwgasapsmpyktnrlgqgpawgnslfedaaeygfgmnmsmfarrthladlaakalesd
asgdvkealqgwlagkndpikskeygdklkkllagqkdgllgqiaamsdlytkksvwifg
gdgwaydigyggldhvlasgedvnvfvmdtevysntggqsskatptgavakfaaagkrtg
kkdlarmvmtygyvyvatvsmgyskqqflkvlkeaesfpgpslviayatcinqglrkgmg
ksqdvmntavksgywplfrydprlaaqgknpfqldskapdgsveeflmaqnrfavldrsf
pedakrlraqvaheldvrfkelehmaatnifesfapaggkadgsvdfgegaefctrddtp
mmarpdsgeacdqnragtseqqgdlskrtkk