PDB entry 2p76

View 2p76 on RCSB PDB site
Description: Crystal structure of a Glycerophosphodiester Phosphodiesterase from Staphylococcus aureus
Class: hydrolase
Keywords: Structural genomics, NYSGXRC, target 6255a, Phosphodiesterase, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, HYDROLASE
Deposited on 2007-03-20, released 2007-04-03
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.249
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glycerophosphoryl diester phosphodiesterase
    Species: Staphylococcus aureus [TaxId:158879]
    Gene: glpQ, SA0820
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7A6H7 (Start-278)
      • cloning artifact (279)
    Domains in SCOPe 2.07: d2p76a1, d2p76a2
  • Chain 'B':
    Compound: Glycerophosphoryl diester phosphodiesterase
    Species: Staphylococcus aureus [TaxId:158879]
    Gene: glpQ, SA0820
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7A6H7 (Start-278)
      • cloning artifact (279)
    Domains in SCOPe 2.07: d2p76b1, d2p76b2
  • Chain 'C':
    Compound: Glycerophosphoryl diester phosphodiesterase
    Species: Staphylococcus aureus [TaxId:158879]
    Gene: glpQ, SA0820
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7A6H7 (Start-278)
      • cloning artifact (279)
    Domains in SCOPe 2.07: d2p76c1, d2p76c2
  • Chain 'D':
    Compound: Glycerophosphoryl diester phosphodiesterase
    Species: Staphylococcus aureus [TaxId:158879]
    Gene: glpQ, SA0820
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7A6H7 (Start-278)
      • cloning artifact (279)
    Domains in SCOPe 2.07: d2p76d1, d2p76d2
  • Chain 'E':
    Compound: Glycerophosphoryl diester phosphodiesterase
    Species: Staphylococcus aureus [TaxId:158879]
    Gene: glpQ, SA0820
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7A6H7 (Start-278)
      • cloning artifact (279)
    Domains in SCOPe 2.07: d2p76e1, d2p76e2
  • Chain 'F':
    Compound: Glycerophosphoryl diester phosphodiesterase
    Species: Staphylococcus aureus [TaxId:158879]
    Gene: glpQ, SA0820
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7A6H7 (Start-278)
      • cloning artifact (279)
    Domains in SCOPe 2.07: d2p76f1, d2p76f2
  • Chain 'G':
    Compound: Glycerophosphoryl diester phosphodiesterase
    Species: Staphylococcus aureus [TaxId:158879]
    Gene: glpQ, SA0820
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7A6H7 (Start-278)
      • cloning artifact (279)
    Domains in SCOPe 2.07: d2p76g1, d2p76g2
  • Chain 'H':
    Compound: Glycerophosphoryl diester phosphodiesterase
    Species: Staphylococcus aureus [TaxId:158879]
    Gene: glpQ, SA0820
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7A6H7 (Start-278)
      • cloning artifact (279)
    Domains in SCOPe 2.07: d2p76h1, d2p76h2
  • Heterogens: NA, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2p76A (A:)
eqtnqiankpqaiqwhtnltnerfttiahrgasgyapehtfqaydkshnelkasyieidl
qrtkdghlvamhdetvnrttnghgkvedytldelkqldagswfnkkypkyarasyknakv
ptldeilerygpnanyyietkspdvypgmeeqllaslkkhhllnnnklknghvmiqsfsd
eslkkihrqnkhvplvklvdkgelqqfndqrlkeirsyaiglgpdytdlteqnthhlkdl
gfivhpytvnekadmlrlnkygvdgvftnfadkykevikeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2p76A (A:)
qwhtnltnerfttiahrgasgyapehtfqaydkshnelkasyieidlqrtkdghlvamhd
etvnrttnghgkvedytldelkqldagswfnkkypkyarasyknakvptldeilerygpn
anyyietkspdvypgmeeqllaslkkhhllnnnklknghvmiqsfsdeslkkihrqnkhv
plvklvdkgelqqfndqrlkeirsyaiglgpdytdlteqnthhlkdlgfivhpytvneka
dmlrlnkygvdgvftnfadkykevike

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2p76B (B:)
eqtnqiankpqaiqwhtnltnerfttiahrgasgyapehtfqaydkshnelkasyieidl
qrtkdghlvamhdetvnrttnghgkvedytldelkqldagswfnkkypkyarasyknakv
ptldeilerygpnanyyietkspdvypgmeeqllaslkkhhllnnnklknghvmiqsfsd
eslkkihrqnkhvplvklvdkgelqqfndqrlkeirsyaiglgpdytdlteqnthhlkdl
gfivhpytvnekadmlrlnkygvdgvftnfadkykevikeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2p76B (B:)
qwhtnltnerfttiahrgasgyapehtfqaydkshnelkasyieidlqrtkdghlvamhd
etvnrttnghgkvedytldelkqldagswfnkkypkyarasyknakvptldeilerygpn
anyyietkspdvypgmeeqllaslkkhhllnnnklknghvmiqsfsdeslkkihrqnkhv
plvklvdkgelqqfndqrlkeirsyaiglgpdytdlteqnthhlkdlgfivhpytvneka
dmlrlnkygvdgvftnfadkykevike

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2p76C (C:)
eqtnqiankpqaiqwhtnltnerfttiahrgasgyapehtfqaydkshnelkasyieidl
qrtkdghlvamhdetvnrttnghgkvedytldelkqldagswfnkkypkyarasyknakv
ptldeilerygpnanyyietkspdvypgmeeqllaslkkhhllnnnklknghvmiqsfsd
eslkkihrqnkhvplvklvdkgelqqfndqrlkeirsyaiglgpdytdlteqnthhlkdl
gfivhpytvnekadmlrlnkygvdgvftnfadkykevikeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2p76C (C:)
qwhtnltnerfttiahrgasgyapehtfqaydkshnelkasyieidlqrtkdghlvamhd
etvnrttnghgkvedytldelkqldagswfnkkypkyarasyknakvptldeilerygpn
anyyietkspdvypgmeeqllaslkkhhllnnnklknghvmiqsfsdeslkkihrqnkhv
plvklvdkgelqqfndqrlkeirsyaiglgpdytdlteqnthhlkdlgfivhpytvneka
dmlrlnkygvdgvftnfadkykevike

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2p76D (D:)
eqtnqiankpqaiqwhtnltnerfttiahrgasgyapehtfqaydkshnelkasyieidl
qrtkdghlvamhdetvnrttnghgkvedytldelkqldagswfnkkypkyarasyknakv
ptldeilerygpnanyyietkspdvypgmeeqllaslkkhhllnnnklknghvmiqsfsd
eslkkihrqnkhvplvklvdkgelqqfndqrlkeirsyaiglgpdytdlteqnthhlkdl
gfivhpytvnekadmlrlnkygvdgvftnfadkykevikeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2p76D (D:)
qwhtnltnerfttiahrgasgyapehtfqaydkshnelkasyieidlqrtkdghlvamhd
etvnrttnghgkvedytldelkqldagswfnkkypkyarasyknakvptldeilerygpn
anyyietkspdvypgmeeqllaslkkhhllnnnklknghvmiqsfsdeslkkihrqnkhv
plvklvdkgelqqfndqrlkeirsyaiglgpdytdlteqnthhlkdlgfivhpytvneka
dmlrlnkygvdgvftnfadkykevike

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2p76E (E:)
eqtnqiankpqaiqwhtnltnerfttiahrgasgyapehtfqaydkshnelkasyieidl
qrtkdghlvamhdetvnrttnghgkvedytldelkqldagswfnkkypkyarasyknakv
ptldeilerygpnanyyietkspdvypgmeeqllaslkkhhllnnnklknghvmiqsfsd
eslkkihrqnkhvplvklvdkgelqqfndqrlkeirsyaiglgpdytdlteqnthhlkdl
gfivhpytvnekadmlrlnkygvdgvftnfadkykevikeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2p76E (E:)
qwhtnltnerfttiahrgasgyapehtfqaydkshnelkasyieidlqrtkdghlvamhd
etvnrttnghgkvedytldelkqldagswfnkkypkyarasyknakvptldeilerygpn
anyyietkspdvypgmeeqllaslkkhhllnnnklknghvmiqsfsdeslkkihrqnkhv
plvklvdkgelqqfndqrlkeirsyaiglgpdytdlteqnthhlkdlgfivhpytvneka
dmlrlnkygvdgvftnfadkykevike

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2p76F (F:)
eqtnqiankpqaiqwhtnltnerfttiahrgasgyapehtfqaydkshnelkasyieidl
qrtkdghlvamhdetvnrttnghgkvedytldelkqldagswfnkkypkyarasyknakv
ptldeilerygpnanyyietkspdvypgmeeqllaslkkhhllnnnklknghvmiqsfsd
eslkkihrqnkhvplvklvdkgelqqfndqrlkeirsyaiglgpdytdlteqnthhlkdl
gfivhpytvnekadmlrlnkygvdgvftnfadkykevikeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2p76F (F:)
qwhtnltnerfttiahrgasgyapehtfqaydkshnelkasyieidlqrtkdghlvamhd
etvnrttnghgkvedytldelkqldagswfnkkypkyarasyknakvptldeilerygpn
anyyietkspdvypgmeeqllaslkkhhllnnnklknghvmiqsfsdeslkkihrqnkhv
plvklvdkgelqqfndqrlkeirsyaiglgpdytdlteqnthhlkdlgfivhpytvneka
dmlrlnkygvdgvftnfadkykevike

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >2p76G (G:)
eqtnqiankpqaiqwhtnltnerfttiahrgasgyapehtfqaydkshnelkasyieidl
qrtkdghlvamhdetvnrttnghgkvedytldelkqldagswfnkkypkyarasyknakv
ptldeilerygpnanyyietkspdvypgmeeqllaslkkhhllnnnklknghvmiqsfsd
eslkkihrqnkhvplvklvdkgelqqfndqrlkeirsyaiglgpdytdlteqnthhlkdl
gfivhpytvnekadmlrlnkygvdgvftnfadkykevikeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2p76G (G:)
qwhtnltnerfttiahrgasgyapehtfqaydkshnelkasyieidlqrtkdghlvamhd
etvnrttnghgkvedytldelkqldagswfnkkypkyarasyknakvptldeilerygpn
anyyietkspdvypgmeeqllaslkkhhllnnnklknghvmiqsfsdeslkkihrqnkhv
plvklvdkgelqqfndqrlkeirsyaiglgpdytdlteqnthhlkdlgfivhpytvneka
dmlrlnkygvdgvftnfadkykevike

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >2p76H (H:)
eqtnqiankpqaiqwhtnltnerfttiahrgasgyapehtfqaydkshnelkasyieidl
qrtkdghlvamhdetvnrttnghgkvedytldelkqldagswfnkkypkyarasyknakv
ptldeilerygpnanyyietkspdvypgmeeqllaslkkhhllnnnklknghvmiqsfsd
eslkkihrqnkhvplvklvdkgelqqfndqrlkeirsyaiglgpdytdlteqnthhlkdl
gfivhpytvnekadmlrlnkygvdgvftnfadkykevikeghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2p76H (H:)
qwhtnltnerfttiahrgasgyapehtfqaydkshnelkasyieidlqrtkdghlvamhd
etvnrttnghgkvedytldelkqldagswfnkkypkyarasyknakvptldeilerygpn
anyyietkspdvypgmeeqllaslkkhhllnnnklknghvmiqsfsdeslkkihrqnkhv
plvklvdkgelqqfndqrlkeirsyaiglgpdytdlteqnthhlkdlgfivhpytvneka
dmlrlnkygvdgvftnfadkykevike