PDB entry 2d5h

View 2d5h on RCSB PDB site
Description: Crystal Structure of Recombinant Soybean Proglycinin A3B4 subunit, its Comparison with Mature Glycinin A3B4 subunit, Responsible for Hexamer Assembly
Class: plant protein
Keywords: glycinin, soybean, globulin, 11s,seed storage protein, plant protein
Deposited on 2005-11-01, released 2006-11-14
The last revision prior to the SCOPe 2.07 freeze date was dated 2010-04-21, with a file datestamp of 2010-04-16.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.248
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glycinin A3B4 subunit
    Species: Glycine max [TaxId:3847]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2d5ha1, d2d5ha2
  • Chain 'B':
    Compound: glycinin A3B4 subunit
    Species: Glycine max [TaxId:3847]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2d5hb1, d2d5hb2
  • Chain 'C':
    Compound: glycinin A3B4 subunit
    Species: Glycine max [TaxId:3847]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2d5hc1, d2d5hc2
  • Chain 'D':
    Compound: glycinin A3B4 subunit
    Species: Glycine max [TaxId:3847]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2d5hd1, d2d5hd2
  • Chain 'E':
    Compound: glycinin A3B4 subunit
    Species: Glycine max [TaxId:3847]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2d5he1, d2d5he2
  • Chain 'F':
    Compound: glycinin A3B4 subunit
    Species: Glycine max [TaxId:3847]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2d5hf1, d2d5hf2
  • Heterogens: CO3, MG

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2d5hA (A:)
itsskfnecqlnnlnalepdhrvesegglietwnsqhpelqcagvtvskrtlnrnglhlp
syspypqmiivvqgkgaigfafpgcpetfekpqqqssrrgsrsqqqlqdshqkirhfneg
dvlvippgvpywtyntgdepvvaislldtsnfnnqldqnprvfylagnpdiehpetmqqq
qqqkshggrkqgqhqqqeeeggsvlsgfskhflaqsfntnedtaeklrspdderkqivtv
egglsvispkwqeqededededeeyeqtpsypprrpshgkheddededeeedqprpdhpp
qrpsrpeqqeprgrgcqtrngveenictmklheniarpsradfynpkagristlnsltlp
alrqfglsaqyvvlyrngiysphwnlnansviyvtrgkgrvrvvncqgnavfdgelrrgq
llvvpqnfvvaeqggeqgleyvvfkthhnavssyikdvfraipsevlsnsynlgqsqvrq
lkyqgnsgplvnp

    Sequence, based on observed residues (ATOM records): (download) 
    >2d5hA (A:)
fnecqlnnlnalepdhrvesegglietwnsqhpelqcagvtvskrtlnrnglhlpsyspy
pqmiivvqgkgaigfafpgcpetfqdshqkirhfnegdvlvippgvpywtyntgdepvva
islldtsnfnnqldqnprvfylagnpdiehpetmqeeggsvlsgfskhflaqsfntnedt
aeklrspdderkqivtvegglsvisnictmklheniarpsradfynpkagristlnsltl
palrqfglsaqyvvlyrngiysphwnlnansviyvtrgkgrvrvvncqgnavfdgelrrg
qllvvpqnfvvaeqggeqgleyvvfkthhnavssyikdvfraipsevlsnsynlgqsqvr
qlkyqgnsgplvnp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2d5hB (B:)
itsskfnecqlnnlnalepdhrvesegglietwnsqhpelqcagvtvskrtlnrnglhlp
syspypqmiivvqgkgaigfafpgcpetfekpqqqssrrgsrsqqqlqdshqkirhfneg
dvlvippgvpywtyntgdepvvaislldtsnfnnqldqnprvfylagnpdiehpetmqqq
qqqkshggrkqgqhqqqeeeggsvlsgfskhflaqsfntnedtaeklrspdderkqivtv
egglsvispkwqeqededededeeyeqtpsypprrpshgkheddededeeedqprpdhpp
qrpsrpeqqeprgrgcqtrngveenictmklheniarpsradfynpkagristlnsltlp
alrqfglsaqyvvlyrngiysphwnlnansviyvtrgkgrvrvvncqgnavfdgelrrgq
llvvpqnfvvaeqggeqgleyvvfkthhnavssyikdvfraipsevlsnsynlgqsqvrq
lkyqgnsgplvnp

    Sequence, based on observed residues (ATOM records): (download) 
    >2d5hB (B:)
fnecqlnnlnalepdhrvesegglietwnsqhpelqcagvtvskrtlnrnglhlpsyspy
pqmiivvqgkgaigfafpgcpetfqdshqkirhfnegdvlvippgvpywtyntgdepvva
islldtsnfnnqldqnprvfylagnpdiehpetmqeggsvlsgfskhflaqsfntnedta
eklrspdderkqivtvegglsvisictmklheniarpsradfynpkagristlnsltlpa
lrqfglsaqyvvlyrngiysphwnlnansviyvtrgkgrvrvvncqgnavfdgelrrgql
lvvpqnfvvaeqggeqgleyvvfkthhnavssyikdvfraipsevlsnsynlgqsqvrql
kyqgnsgplvnp

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2d5hC (C:)
itsskfnecqlnnlnalepdhrvesegglietwnsqhpelqcagvtvskrtlnrnglhlp
syspypqmiivvqgkgaigfafpgcpetfekpqqqssrrgsrsqqqlqdshqkirhfneg
dvlvippgvpywtyntgdepvvaislldtsnfnnqldqnprvfylagnpdiehpetmqqq
qqqkshggrkqgqhqqqeeeggsvlsgfskhflaqsfntnedtaeklrspdderkqivtv
egglsvispkwqeqededededeeyeqtpsypprrpshgkheddededeeedqprpdhpp
qrpsrpeqqeprgrgcqtrngveenictmklheniarpsradfynpkagristlnsltlp
alrqfglsaqyvvlyrngiysphwnlnansviyvtrgkgrvrvvncqgnavfdgelrrgq
llvvpqnfvvaeqggeqgleyvvfkthhnavssyikdvfraipsevlsnsynlgqsqvrq
lkyqgnsgplvnp

    Sequence, based on observed residues (ATOM records): (download) 
    >2d5hC (C:)
fnecqlnnlnalepdhrvesegglietwnsqhpelqcagvtvskrtlnrnglhlpsyspy
pqmiivvqgkgaigfafpgcpetfdshqkirhfnegdvlvippgvpywtyntgdepvvai
slldtsnfnnqldqnprvfylagnpdiehpetmqeggsvlsgfskhflaqsfntnedtae
klrspdderkqivtvegglsviictmklheniarpsradfynpkagristlnsltlpalr
qfglsaqyvvlyrngiysphwnlnansviyvtrgkgrvrvvncqgnavfdgelrrgqllv
vpqnfvvaeqggeqgleyvvfkthhnavssyikdvfraipsevlsnsynlgqsqvrqlky
qgnsgplvnp

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2d5hD (D:)
itsskfnecqlnnlnalepdhrvesegglietwnsqhpelqcagvtvskrtlnrnglhlp
syspypqmiivvqgkgaigfafpgcpetfekpqqqssrrgsrsqqqlqdshqkirhfneg
dvlvippgvpywtyntgdepvvaislldtsnfnnqldqnprvfylagnpdiehpetmqqq
qqqkshggrkqgqhqqqeeeggsvlsgfskhflaqsfntnedtaeklrspdderkqivtv
egglsvispkwqeqededededeeyeqtpsypprrpshgkheddededeeedqprpdhpp
qrpsrpeqqeprgrgcqtrngveenictmklheniarpsradfynpkagristlnsltlp
alrqfglsaqyvvlyrngiysphwnlnansviyvtrgkgrvrvvncqgnavfdgelrrgq
llvvpqnfvvaeqggeqgleyvvfkthhnavssyikdvfraipsevlsnsynlgqsqvrq
lkyqgnsgplvnp

    Sequence, based on observed residues (ATOM records): (download) 
    >2d5hD (D:)
fnecqlnnlnalepdhrvesegglietwnsqhpelqcagvtvskrtlnrnglhlpsyspy
pqmiivvqgkgaigfafpgcpetfqdshqkirhfnegdvlvippgvpywtyntgdepvva
islldtsnfnnqldqnprvfylagnpdiehpetmqqqqeeeggsvlsgfskhflaqsfnt
nedtaeklrspdderkqivtvegglsvinictmklheniarpsradfynpkagristlns
ltlpalrqfglsaqyvvlyrngiysphwnlnansviyvtrgkgrvrvvncqgnavfdgel
rrgqllvvpqnfvvaeqggeqgleyvvfkthhnavssyikdvfraipsevlsnsynlgqs
qvrqlkyqgnsgplvnp

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2d5hE (E:)
itsskfnecqlnnlnalepdhrvesegglietwnsqhpelqcagvtvskrtlnrnglhlp
syspypqmiivvqgkgaigfafpgcpetfekpqqqssrrgsrsqqqlqdshqkirhfneg
dvlvippgvpywtyntgdepvvaislldtsnfnnqldqnprvfylagnpdiehpetmqqq
qqqkshggrkqgqhqqqeeeggsvlsgfskhflaqsfntnedtaeklrspdderkqivtv
egglsvispkwqeqededededeeyeqtpsypprrpshgkheddededeeedqprpdhpp
qrpsrpeqqeprgrgcqtrngveenictmklheniarpsradfynpkagristlnsltlp
alrqfglsaqyvvlyrngiysphwnlnansviyvtrgkgrvrvvncqgnavfdgelrrgq
llvvpqnfvvaeqggeqgleyvvfkthhnavssyikdvfraipsevlsnsynlgqsqvrq
lkyqgnsgplvnp

    Sequence, based on observed residues (ATOM records): (download) 
    >2d5hE (E:)
itsskfnecqlnnlnalepdhrvesegglietwnsqhpelqcagvtvskrtlnrnglhlp
syspypqmiivvqgkgaigfafpgcpetflqdshqkirhfnegdvlvippgvpywtyntg
depvvaislldtsnfnnqldqnprvfylagnpdiehpetmqeeggsvlsgfskhflaqsf
ntnedtaeklrspdderkqivtvegglsvisnictmklheniarpsradfynpkagrist
lnsltlpalrqfglsaqyvvlyrngiysphwnlnansviyvtrgkgrvrvvncqgnavfd
gelrrgqllvvpqnfvvaeqggeqgleyvvfkthhnavssyikdvfraipsevlsnsynl
gqsqvrqlkyqgnsgplvnp

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2d5hF (F:)
itsskfnecqlnnlnalepdhrvesegglietwnsqhpelqcagvtvskrtlnrnglhlp
syspypqmiivvqgkgaigfafpgcpetfekpqqqssrrgsrsqqqlqdshqkirhfneg
dvlvippgvpywtyntgdepvvaislldtsnfnnqldqnprvfylagnpdiehpetmqqq
qqqkshggrkqgqhqqqeeeggsvlsgfskhflaqsfntnedtaeklrspdderkqivtv
egglsvispkwqeqededededeeyeqtpsypprrpshgkheddededeeedqprpdhpp
qrpsrpeqqeprgrgcqtrngveenictmklheniarpsradfynpkagristlnsltlp
alrqfglsaqyvvlyrngiysphwnlnansviyvtrgkgrvrvvncqgnavfdgelrrgq
llvvpqnfvvaeqggeqgleyvvfkthhnavssyikdvfraipsevlsnsynlgqsqvrq
lkyqgnsgplvnp

    Sequence, based on observed residues (ATOM records): (download) 
    >2d5hF (F:)
fnecqlnnlnalepdhrvesegglietwnsqhpelqcagvtvskrtlnrnglhlpsyspy
pqmiivvqgkgaigfafpgcpetfeqlqdshqkirhfnegdvlvippgvpywtyntgdep
vvaislldtsnfnnqldqnprvfylagnpdiehpetmqqeggsvlsgfskhflaqsfntn
edtaeklrspdderkqivtvegglsvisnictmklheniarpsradfynpkagristlns
ltlpalrqfglsaqyvvlyrngiysphwnlnansviyvtrgkgrvrvvncqgnavfdgel
rrgqllvvpqnfvvaeqggeqgleyvvfkthhnavssyikdvfraipsevlsnsynlgqs
qvrqlkyqgnsgplvnp